Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00619 ATGGCCTGCGTGAAACTGGGTTCCAAAGCTGATGCTTTTCAGCGTCAAGGGCAGGCCTGGTTCTGTACGACTGGGCTTCCTAGTGATATAGTTGTTGAAGTTGGAGAGATGTCCTTCCATCTTCACAAGTTTCCTTTGCTCTCTAGAAGTGGGGTTCTGGAAAGAATGATTGCCGAGGCTTCTGAATCAGAGGAAGAATGCGCGATATCACTCGGTGACATTCCTGGTGGTGCCAAAACATTTGAACTCGTGGCAAAATTCTGCTATGGGGTGAAACTTGAACTTACAGCATCAAATGTTGTGTACCTGTGGTGTGCTGCAGAGCGTCTAGAAATGACTGAGGAATATGGTGAAGGTAATCTAATTTCACAAGCTGAAACCTTTTTCAATCAAGTGGTCCTCCGCAGTTGGAAAGACTCTCTGAGGGCACTTGAAACCTGTGATGATGTTTTGGCCCATGCTGAAGAGCTCCACATTGTGAAAAGATGCATCGAGTCACTAGCAGCAAAGGCATCTACTGACCCAAATTTATTTGGGTGGCCGGTGCTGGAGCGTGGTGGTCCTTTGCAGAGCCCTGGTGGTAGTGTTTTGTGGAATGGAATAAGTACTGGTGCAAGACCAAAAAATTCAAGTGCAGATTGGTGGTATGAGGATGTATCAAATTTGAGTTTACCACTTTATAAGAGATTAGTAGCTGTCATGGAATCGCGAGGCATTAGGCAGGAGATTATTGCTGGTTCTCTTGCTTTCTATGCTAAAACATATCTGCCTATGCTAAACCGACGCCAGGTTTCCGGTGAGTCCAGCACCCGGCTGACACAGGGAGCCATGGGGTCTCCACTGTCTGAAGATGACCAGAAGATTCTACTGGAAGAGATTGATGGTTTGCTCCCTATGCAGAAGGGCCTGGTCCAAACAAAGTTCTTGTTTGGTCTACTTCGAACGGCCATGATTCTACGAGTGAGCCCTTCTTGCATATCTAATTTGGAGAAACGGATCGGCATGCAGCTTGACCAAGCTACTCTAGAGGATCTCTTAATGCCAAATTTCTCATACTCCATGGAGACACTTTACAATGTTGACTGTGTGCAAAGAATTCTTGACCATTTCCTTGCCATGGATCAGGTTACTGGCGGTGCCTCTCCATGCTCGATCGACGATGGTCAATTGATCGGATCACCTTCATTAACACCAATCACCATGGTAGCCAAGTTGATTGATGGCTACCTTGCAGAGGTTGCCCCAGATATTAATTTAAAACTTCCAAAGTTTCAGGCCCTTGCTGCAGCAGTTCCAGAGTATGCTAGGCCTTTGGATGATGGTTTATATCGTGCATTAGATATTTACTTGAAGTCTCACCCATGGTTGGTGGAGTCTGAGAGAGAGCAGCTATGTAGGCTGATGGATTGCCAGAAGCTCTCATTAGAGGCATGCACGCACGCGGCGCAGAACGAGAGGCTACCTATCAGAATAATTTTTCAAGTTCTATTTTTTGAGCAGCTCCAGCTACGAACATCGATTGCCGGTTGCTTTCTAGTTTCAGACAATCTGGACGGATCGAGGCAGCTGAGAAGCGGGCTTGTGGGATCAACGGACGGTGGATGGGCGTCGGCGGTGAAGGAAAATCAGGTTTTGAAAGTGGGAATGGATAACATGAGGATGAGGGTGTCTGAGCTGGAGAAGGAGTGTTCAAACATGAGACAGGAGATTGAGAAATTGGGTCGTTCAAAGGGATCAAGCGCATGGGGAACTGTTTCTAAGAAACTTGGGTTCAAGATGAAGTCTCAGATGTGTAGTGCTCAAGAAGGGTCAGTTAGCAACCAGAACAACAATGGAAATAATAAGGTTGAAAAGTTGAAGGAAAGACATGTAAAACACAAGAAAAGTTCTTCTATCAGTGACAAGGCATCAGTGTCTTCAATTGTTCATTCATAG 1935 0.4589 MACVKLGSKADAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVLERMIAEASESEEECAISLGDIPGGAKTFELVAKFCYGVKLELTASNVVYLWCAAERLEMTEEYGEGNLISQAETFFNQVVLRSWKDSLRALETCDDVLAHAEELHIVKRCIESLAAKASTDPNLFGWPVLERGGPLQSPGGSVLWNGISTGARPKNSSADWWYEDVSNLSLPLYKRLVAVMESRGIRQEIIAGSLAFYAKTYLPMLNRRQVSGESSTRLTQGAMGSPLSEDDQKILLEEIDGLLPMQKGLVQTKFLFGLLRTAMILRVSPSCISNLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVDCVQRILDHFLAMDQVTGGASPCSIDDGQLIGSPSLTPITMVAKLIDGYLAEVAPDINLKLPKFQALAAAVPEYARPLDDGLYRALDIYLKSHPWLVESEREQLCRLMDCQKLSLEACTHAAQNERLPIRIIFQVLFFEQLQLRTSIAGCFLVSDNLDGSRQLRSGLVGSTDGGWASAVKENQVLKVGMDNMRMRVSELEKECSNMRQEIEKLGRSKGSSAWGTVSKKLGFKMKSQMCSAQEGSVSNQNNNGNNKVEKLKERHVKHKKSSSISDKASVSSIVHS 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00619 644 ProSiteProfiles BTB domain profile. 28 97 IPR000210 GO:0005515
Vimu10g00619 644 CDD BTB_POZ_NPY3-like 19 122 - -
Vimu10g00619 644 Gene3D Potassium Channel Kv1.1; Chain A 11 132 IPR011333 -
Vimu10g00619 644 MobiDBLite consensus disorder prediction 600 614 - -
Vimu10g00619 644 Pfam BTB/POZ domain 27 113 IPR000210 GO:0005515
Vimu10g00619 644 Pfam NPH3 family 213 478 IPR027356 -
Vimu10g00619 644 PANTHER OS12G0117600 PROTEIN 22 601 IPR043454 -
Vimu10g00619 644 ProSiteProfiles NPH3 domain profile. 213 502 IPR027356 -
Vimu10g00619 644 Coils Coil 542 576 - -
Vimu10g00619 644 MobiDBLite consensus disorder prediction 600 644 - -
Vimu10g00619 644 SUPERFAMILY POZ domain 16 114 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00619 Vimu-Chr10 5296552 5300074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00619 8 632 EF-hand Containing Proteins AT3G44820 46.319 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00619 - - gmx:100794676 1191.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00619 10 5296552 5300074 Vimu10g00619 10 5296552 5300074 ECH