Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00583 ATGAACTTCAGGTTCCAGAATCTGTTGGGAGCCCCCTACAGAGGGGGCAACGCGGTAATTTCCAACAACACCCTGCTGCTCTCCCCTGTCGGTAACCGCGTCGCCGTCACCGACCTCCTCAAGTCCGAAACCTCCACCCTCCCCATCCAGTCCTCCTCCAATGTTGCCCGCATCGCTGTCTCCCCTGACGCCACCTTCCTCCTCGCCGTCGACGACCGCAATCGCTGCCTCTTCATTAACCTACGCCGCCGCGTCCTCCTCCACCGCATCTCCTTCAAGGACCGCGTCGCCGCCGTAGAATTCAGCCCTGACGGGGCTCTCATCGCCGTCGCCACCGGAAAGCTTGTCCAGATCTGGCGCTCTCCGGCCTTCCGCCGCGAGTACTTCCCCTTCGAGCTCGTACGCACCTTCGCCGAGTTCGACGCGAAAGTAACCACCCTCGATTGGAGCCCGGACTCCAAGTACCTCATCGTCGGGTCCAAGGATTTAACCGCGAGAATCTTGTGCTTGAAGAAATTGAATAGTGGTGGTAAGAAAAAACCCTTTTTGCTCCTAGGGCACAGGGATTCGGTTGTAGGTTCGTTCTTCGGTGTCAATTCGAAAACTAATAGAGTTTGTAAGGCTTATACGATTACTAGGGATTGTTACTTATTTAGCTGGGGTTTTACCTCTGATAGTGGTGGTGAGGCTGAGGGTTCGGAGCCGCCCTCGCCAGGGACGCCGGAGAGGGACGTCGAAAGGAATTTGGAGGTTATTGAGAACGATGGTGTGAAGAAGAGGAAGAAAATTGATGTTGAGGATGGTGATGAGGGTTACCTGAGTAAGGGAAAGTGGGAGCTATTGAGGAAGAATGGGTTTATGCAGGGATGGGCAAAGGTGACGGCATGTGATTATCATAGGGGGCTAGATATGGTGGTTGTTGGATTTTCTAATGGTGTGTTTGGGTTATATCAGATGCCAGATTTTGTGTGCATTCATTTGTTGTCTATTTCGAGGGAGAAAATTACCACTGCTGTGTTTAATGAGCTTGGGAACTGGCTGACATTTGGCTGCGCCAAATTGGGGCAGCTGCTGGTGTGGGAGTGGCGGTCTGAGAGCTACATTTTGAAGCAGCAGGGTCATTACTTTGATGTTAACTGCGTTGCTTATTCGGCAGACTCGCAGCTCCTTGCCACTGGAGCAGATGATAATAAAGTGAAGGTGTGGACACTTTCGTCAGGATTTTGCTTTGTTACATTTTCGGAGCACACTAATTCTGTTACGGCTTTACATTTTATGGCAAGTAACAATTGCCTTCTGAGTGCATCTCTTGACGGGACCATTCGTGCATGGGATTTATTACGCTACCGGAATTTTAGGACCTTTACAACCCCTTCTTCTAGACAGTTTGTTTCCTTGACAGCTGATCAAAGTGGTGAAGTGATATGTGCAGGCACTTCAGATTCCTTTGAGATTTTTGTTTGGTCAATGAGAACGGGACGCTTGCTGGATGTGCTTAGTGGTCATGAAGCTCCTGTTCATGGGCTGGTCTTTTCTCCTACAAATGCTGTCTTGGCTTCATCATCATATGATAAATCTGTTCGGCTGTGGGATGTCTTTGATGGAAAAGGAGCAGTTGAAACATTTCCTCACACTCATGATGTTCTTACAGTAGTGTATCGTCCAGATGGAAGGCAGTTAGCTTGCAGCACATTAGATGGGCAAATTCATTTTTGGGACCCAGTAGATGGTTTGTTGATGTACACTATAGAAGGTTCTAGAGATATTGCTGGTGGGCGTCTTATGACTGACCGTAGGTCCGCAGCTAACTCAACTTCAGGGAAGTTCTTTACAACTTTGTGCTATTCAGCTGATGGAAGCTACATATTAGCTGGGGGAAGTAGCAGATACATCTGCATGTATGATGTTGCAGATCAGGTTTTACTTCGACGTTTCCAGATAACTCACAATCTCTCATTAGATGGAGTGCTTGACATTTTAAACTCAAAAAATATGACAGATGCTGGCCCTCTGGATTTGATTGATGATGACAACAGTGACATTGAAGAAGGCATTGAGAAACAAACTCGAGGGAAACTAGGATTTAACTTGCCAGGATCTTTGCCTAACCGTGGAAGGCCTGTTATTCAGACAAAGTGCCTGAGGATTGCACCTACAGGGCGTAGTTTTGTTGCAGCAACAACTGAGGGAGTTTTGGTTTATTCTGTTGATGAATCATTCATATTCGATCCAACTGACCTTGACATAAATGTTACACCAGAGGCTGTTGAAGAAGCTCTTCGTGAAAATCAACCAAGTAAAGCCTTGATCCTTAGCCTTCGCTTGAATGAGGATTCCTTCATTAAAAAATGTATATTTGCGGTTAGTCCGGCAGATATTCCTGCAGTTGCCACGTCAATCCCTTACAAATATCTTCAACGATTAGTGGAGGCACTTGCAGATCTCTTAGAAAACTGCCCACATTTGGAATTTATACTTAGATGGTGTCAGGAGCTCTGCAAGGCCCATGGGAATTCTATTCAGCAGAACTCTCGCAATCTGTTACCATCATTAAAATCTTTGCAGAAAGCAATCACTAAAATTCATCAGGATCTATCGGATACATGTTCCTCCAACGAATATATGCTGCGGTATTTATGCTCTTCTGGTGCCAAGAAATGA 2661 0.4675 MNFRFQNLLGAPYRGGNAVISNNTLLLSPVGNRVAVTDLLKSETSTLPIQSSSNVARIAVSPDATFLLAVDDRNRCLFINLRRRVLLHRISFKDRVAAVEFSPDGALIAVATGKLVQIWRSPAFRREYFPFELVRTFAEFDAKVTTLDWSPDSKYLIVGSKDLTARILCLKKLNSGGKKKPFLLLGHRDSVVGSFFGVNSKTNRVCKAYTITRDCYLFSWGFTSDSGGEAEGSEPPSPGTPERDVERNLEVIENDGVKKRKKIDVEDGDEGYLSKGKWELLRKNGFMQGWAKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSADSQLLATGADDNKVKVWTLSSGFCFVTFSEHTNSVTALHFMASNNCLLSASLDGTIRAWDLLRYRNFRTFTTPSSRQFVSLTADQSGEVICAGTSDSFEIFVWSMRTGRLLDVLSGHEAPVHGLVFSPTNAVLASSSYDKSVRLWDVFDGKGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPVDGLLMYTIEGSRDIAGGRLMTDRRSAANSTSGKFFTTLCYSADGSYILAGGSSRYICMYDVADQVLLRRFQITHNLSLDGVLDILNSKNMTDAGPLDLIDDDNSDIEEGIEKQTRGKLGFNLPGSLPNRGRPVIQTKCLRIAPTGRSFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVEEALRENQPSKALILSLRLNEDSFIKKCIFAVSPADIPAVATSIPYKYLQRLVEALADLLENCPHLEFILRWCQELCKAHGNSIQQNSRNLLPSLKSLQKAITKIHQDLSDTCSSNEYMLRYLCSSGAKK 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00583 886 FunFam Periodic tryptophan protein 2 279 482 - -
Vimu10g00583 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Vimu10g00583 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 446 - -
Vimu10g00583 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 573 IPR001680 GO:0005515
Vimu10g00583 886 SUPERFAMILY DPP6 N-terminal domain-like 8 224 - -
Vimu10g00583 886 Pfam WD domain, G-beta repeat 545 573 IPR001680 GO:0005515
Vimu10g00583 886 Pfam WD domain, G-beta repeat 409 445 IPR001680 GO:0005515
Vimu10g00583 886 Pfam WD domain, G-beta repeat 494 531 IPR001680 GO:0005515
Vimu10g00583 886 Pfam WD domain, G-beta repeat 134 167 IPR001680 GO:0005515
Vimu10g00583 886 Pfam WD domain, G-beta repeat 372 402 IPR001680 GO:0005515
Vimu10g00583 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
Vimu10g00583 886 ProSitePatterns Trp-Asp (WD) repeats signature. 432 446 IPR019775 -
Vimu10g00583 886 FunFam Periodic tryptophan protein 2 22 248 - -
Vimu10g00583 886 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Vimu10g00583 886 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Vimu10g00583 886 PRINTS G protein beta WD-40 repeat signature 390 404 IPR020472 -
Vimu10g00583 886 Gene3D - 483 667 IPR015943 GO:0005515
Vimu10g00583 886 PANTHER WD40 REPEAT PROTEIN 1 885 IPR027145 -
Vimu10g00583 886 SUPERFAMILY WD40 repeat-like 127 578 IPR036322 GO:0005515
Vimu10g00583 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 407 - -
Vimu10g00583 886 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Vimu10g00583 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 532 - -
Vimu10g00583 886 CDD WD40 324 627 - -
Vimu10g00583 886 Gene3D - 21 237 IPR015943 GO:0005515
Vimu10g00583 886 Pfam Dip2/Utp12 Family 776 881 IPR007148 -
Vimu10g00583 886 SMART WD40_4 83 120 IPR001680 GO:0005515
Vimu10g00583 886 SMART WD40_4 448 489 IPR001680 GO:0005515
Vimu10g00583 886 SMART WD40_4 364 403 IPR001680 GO:0005515
Vimu10g00583 886 SMART WD40_4 535 573 IPR001680 GO:0005515
Vimu10g00583 886 SMART WD40_4 130 169 IPR001680 GO:0005515
Vimu10g00583 886 SMART WD40_4 492 531 IPR001680 GO:0005515
Vimu10g00583 886 SMART WD40_4 406 445 IPR001680 GO:0005515
Vimu10g00583 886 SMART WD40_4 596 635 IPR001680 GO:0005515
Vimu10g00583 886 SMART WD40_4 40 80 IPR001680 GO:0005515
Vimu10g00583 886 SMART WD40_4 321 361 IPR001680 GO:0005515
Vimu10g00583 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 454 IPR001680 GO:0005515
Vimu10g00583 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 412 IPR001680 GO:0005515
Vimu10g00583 886 Gene3D - 288 482 IPR015943 GO:0005515
Vimu10g00583 886 SUPERFAMILY DPP6 N-terminal domain-like 542 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00583 Vimu-Chr10 4775084 4780298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00583 470 646 Miscellaneous Gene Families AT5G08390 19.774 4.42e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00583 K14558 - gmx:100526905 1661.35