Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00567 ATGCAAAACCTCATCATCTTTATCGTCGTCCTAATAATGGTGGACCTCACATCTTCAACACCCTCTCCACCAACACAACAAATCAACAACATTCTCGATGCGCTAATAGGTGCCACTGACTTTAGCGCCTGGGTCTCCATCCTCTCCTCCGCCAACGGCACTCTCCTTCCGCTCAGCGCCACCCTCTTCATCCCACGCGACGCCGCCTTCGACCGTCCTCCGCCGGATCCCCTCCTACTGCCCTATCACGTCGTCCCCCAGCGCCTCCCCTTCTCTGACCTCCTCCTCCTCCCCCGCCGCGCCCGCCTCCCTACCCTCCTCGTCGCCAAAACAATCTCCGTCACCGACAACTCCCCCGCCAACTTCTCCCTCGACCACACCCCCCTCACCCACCCCGACCTCTTCTCCACCCCTTCCCTCGCCGTCCACGGCGTCCAGTCCTTCCTCGACTACTCTCTCTACGGCGACGGCCTCCCGCCCTCGCTCCCTCCCTCCGCCGGCCACTCCATCGACTCCTACTGGAACTCAGGTGCGTCCTCCTCCGGCTCCCGCCTCAACAGCGTCGTTTTGCTCCCCTTCTTCTCCTTCGTTCTTCCACTGCTACAATGCCAAGGTTTTTCAATCTCTCGATTTCAAGAAATTTCAAGAAATTGA 654 0.5948 MQNLIIFIVVLIMVDLTSSTPSPPTQQINNILDALIGATDFSAWVSILSSANGTLLPLSATLFIPRDAAFDRPPPDPLLLPYHVVPQRLPFSDLLLLPRRARLPTLLVAKTISVTDNSPANFSLDHTPLTHPDLFSTPSLAVHGVQSFLDYSLYGDGLPPSLPPSAGHSIDSYWNSGASSSGSRLNSVVLLPFFSFVLPLLQCQGFSISRFQEISRN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00567 217 ProSiteProfiles FAS1/BIgH3 domain profile. 28 153 IPR000782 -
Vimu10g00567 217 FunFam Fasciclin-like arabinogalactan family protein 22 151 - -
Vimu10g00567 217 SMART fasc_3 61 152 IPR000782 -
Vimu10g00567 217 SUPERFAMILY FAS1 domain 23 148 IPR036378 -
Vimu10g00567 217 Gene3D FAS1 domain 13 150 IPR036378 -
Vimu10g00567 217 PANTHER OS02G0491300 PROTEIN-RELATED 2 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00567 Vimu-Chr10 4653624 4654277 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00567 - - var:108319451 324.709