Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00565 CCGAAGAGCTTAATATTTTATTTTTGTTTATTTAATTACGTGCCACGTGGTAGCTTGTCGGTGGACCCAAAGAAGCGTGTTAGCAGGGTGAGTTCGCTCGCACACTTGAATCGGAGGGACTGCGAAGACGCAAACAAGCACGCAATCGACCAACCATGGCGGCTTCTGATCCCAACAAGTTGCTCGCCAAAGCTGATAAGCTGTCTAACAACACTCAGTCTCACGAGGTGGAGTGCGGATTGGAAAAGTGCTACTGCTCTATATGAGCAGGCAGCTAATGGGTTTCGAGTTGCCAGGAACCATGAGAAAGCCAAAATAGCATATGAGAAAGCTTCAAAAGGACAAGAGATGCTTTCATCACCTTGGGATGCGGCTAAGCACATGGAATCTGCCGCAGCTTTGGCAAAGGATCTAAGTAATTGGCAGGAAGTTGGAGACTTCTATCGAAAGGCATCTGAATTGTACATGGAGTGTGGGAGACCGCAACCTGCATCAGATGCCCTTGCAAAGGCAGCCCGTGCTTTGGAAGATAGCATGCCTGAAGAAGCGATTCAGCTATATACAGATGCTTGTACAACTCTTGAAGACGATGGAAGAGAACAAATGGCCTTTGACCTATATCGTGCTGCTGCTAACGTTTATATAAAACTTCAAAAATATACAGATGCAGCATCTTTCATGTTGAGATTGGGCTTGGCAGCTGACAAGTGTAATGCTACCAATAGCCAGAGCAAGGCATATCTCAGTGCAATTGTTATCTACCTTTATGCTGATGACTTTAAGCAAGCTGAGAAATGCTATAATGACTGTTCTCAGGTTGATGCCTTTCTCAGAAGTGACCAGAATCGTTGTGCTAGCAAGCTACTTGCTGCCTACACAGATGGAGATGTTGAAGAAATCAAACGTATTGCTCAGTCGAGTGGTATTTCACATCTTGACCATGTGGTAAGTGATTTAGTACATGAGTTCTTATGGAACAAGAACAGAGCCAAAGTAAACGTATGGGGGATACAGCTGATACCTGTTGTCTATTCTGAAAACTCCTGGCATGGCTTCATATTTTTTTTTTTTTTTTTTTTTGTAAACTCTACTCGCAATTCTGAGGAATACGACCGTCCTATGTTCCAAGGTGCCTTGATTCTTGACATACAACTTGAGTCTCCTCAGTTTTTTATTGTACGTCCTGAACATTGTTTCTTTCTTCAATCTATCTGTATCCTCCCATTGCCCATGGAGCACAATGCATCTGTAAACTACTTTGACGATGACTCAGTTCAACATTGCTTCTCGTACTGGTTCACACAATCTGTCAGTTCAGTGATCATTAGGCTTGCGAGGAAACTTCCAACAGGTGATGTGAATGCATTAAAGGCTAAGAATGCTGCTGAAGAAGATGACCTTGATGAAGACGACCTGACTTAA 1422 0.4332 PKSLIFYFCLFNYVPRGSLSVDPKKRVSRVSSLAHLNRRDCEDANKHAIDQPWRLLIPTSCSPKLISCLTTLSLTRWSADWKSATALYEQAANGFRVARNHEKAKIAYEKASKGQEMLSSPWDAAKHMESAAALAKDLSNWQEVGDFYRKASELYMECGRPQPASDALAKAARALEDSMPEEAIQLYTDACTTLEDDGREQMAFDLYRAAANVYIKLQKYTDAASFMLRLGLAADKCNATNSQSKAYLSAIVIYLYADDFKQAEKCYNDCSQVDAFLRSDQNRCASKLLAAYTDGDVEEIKRIAQSSGISHLDHVVSDLVHEFLWNKNRAKVNVWGIQLIPVVYSENSWHGFIFFFFFFFVNSTRNSEEYDRPMFQGALILDIQLESPQFFIVRPEHCFFLQSICILPLPMEHNASVNYFDDDSVQHCFSYWFTQSVSSVIIRLARKLPTGDVNALKAKNAAEEDDLDEDDLT 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00565 473 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 69 321 IPR000744 GO:0006886
Vimu10g00565 473 Gene3D Tetratricopeptide repeat domain 67 323 IPR011990 GO:0005515
Vimu10g00565 473 FunFam Gamma-soluble NSF attachment protein 62 324 - -
Vimu10g00565 473 Pfam Soluble NSF attachment protein, SNAP 81 313 - -
Vimu10g00565 473 SUPERFAMILY TPR-like 67 302 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00565 Vimu-Chr10 4646023 4652868 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00565 K21198 - gmx:100790986 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00565 10 4646023 4652868 Vimu10g00565 10 4646023 4652868 ECH