Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00543 ATGGGTTTGAAGTGTCTGCTGGTTGTTATGTGTGTTTGGGCTTGGTTAGGATCGTTGACTTCTGCAACTTCTGATGATGGGTTGATGAGGGTTGGTCTAAAAAGGAGGAATTTAGACCTTCAGAGTCTTAAAGATGCAAGAATCAAAGAGTTCGTTCGTCCTACTGATTTAGGGGGTGATCAAAAAAATTGTTGTGATGAAGATATAATATATCTTAAGAATTATGTTGATGCACAATATTTTGGGGAGATTAGTATTGGTTCACCCCCTCAATACTTCAATGTTGTGTTTGACACTGGCAGCTCAAATCTTTGGATTCCATCTTCCAAATGCATCTTTTCTATCGCTTGCTATTTTCATTCCAAGTATAGGTCGAAGATATCTAGCACCTATACCGAAATTGGAACACCTTGCAGTATCCCCTATGGCCAAGGATCTATTTATGGATTCTTCAGCCAAGATAATGTACAAGTTGGAGATGTCATCATCAAAGATCAAGAATTTGCGGAGATTACAAGAGAGGGATCATTCGCACTTTCTGCTCTTCCATTTGATGGCATACTTGGACTCGGGTTCCTGGATGCTGCAATTGGAAAAGTCACACCAGTTTGGTATAATATGATAGAGCAAGGGCAAATATGCCACCAAATTTTCTCTCTTTGGCTAAATCAAGATCCAACAGAAGAAATGGGGGGTGAAATTGTCTTTGGTGGTATTGACTACAGGCATTTTAGAGGTGAACACACATATGTTCCCCTTTCTCAAAAGGGTTATTGGCAGATTGATGTGGGAGATGTTCTAGTTACAAGTAACTCAACAGGGTTGTGTGAGGGTGGCTGTGCTGCAATTATAGACTCGGGGACATCTCTAATTGCTGGTCCAACTAGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAAGGGTATGTTAGTTTTGAGTGTAAAAGCATTCTCCATAACTATGGGGATTCAATATGGGCATCCTTAATTGCTGGGTTAAATCCAGAACTTGTATGCAGTGACATTGGACTCTGTTCAAACAACGGATTTAACACAATGGATGATGTTATTGAAACAGTGGTGCATAATGAAAGTTGGAATGGATCACCAATAAGGGAGAGCCCCTTTTGTTCCTTTTGCAATATGATTGTCCTTTGGATCCAAGTTCAGATTAAGCAAAGCAATGTGAAAGAAAAAGTATTTAAATATGTGGATGAGGTAGGTGTTTACAAGCTTACAGTTGTTAGATATGCTTCACATCACATAAGTCTCCAATTAATCACTCACAGGCTTTTTCTGTGTCAATTTCCTTCTCTAAAGCTGTGTGAGAAGCTTCCAAATCCCCCGGGACATTCATTTATAAACTGCAATAGTATTTCTTCCATGCCACACATCACATTCACGATTGGAAACAAATCCTTTCCCCTCTCTCCAGAACAGTATGTACTTCAATTTGAAGAAGGCTGTTCTACTGTCTGCTATGGTGGTTTTGTTGCTATAGATGTTCCTCCTCCACAGGGTCCCCTCTGGGTTCTTGGAAATATATTCTTGGGGGCATATCATACAGTATTTGACTATGGAAATCTCCGTATAGGATTTGCAGAAGCTGCATAA 1617 0.3995 MGLKCLLVVMCVWAWLGSLTSATSDDGLMRVGLKRRNLDLQSLKDARIKEFVRPTDLGGDQKNCCDEDIIYLKNYVDAQYFGEISIGSPPQYFNVVFDTGSSNLWIPSSKCIFSIACYFHSKYRSKISSTYTEIGTPCSIPYGQGSIYGFFSQDNVQVGDVIIKDQEFAEITREGSFALSALPFDGILGLGFLDAAIGKVTPVWYNMIEQGQICHQIFSLWLNQDPTEEMGGEIVFGGIDYRHFRGEHTYVPLSQKGYWQIDVGDVLVTSNSTGLCEGGCAAIIDSGTSLIAGPTSVVTQINHAIGAEGYVSFECKSILHNYGDSIWASLIAGLNPELVCSDIGLCSNNGFNTMDDVIETVVHNESWNGSPIRESPFCSFCNMIVLWIQVQIKQSNVKEKVFKYVDEVGVYKLTVVRYASHHISLQLITHRLFLCQFPSLKLCEKLPNPPGHSFINCNSISSMPHITFTIGNKSFPLSPEQYVLQFEEGCSTVCYGGFVAIDVPPPQGPLWVLGNIFLGAYHTVFDYGNLRIGFAEAA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00543 538 ProSiteProfiles Saposin B type domain profile. 310 350 IPR008139 -
Vimu10g00543 538 SUPERFAMILY Saposin 312 407 IPR011001 -
Vimu10g00543 538 SUPERFAMILY Acid proteases 28 537 IPR021109 -
Vimu10g00543 538 ProSiteProfiles Peptidase family A1 domain profile. 80 535 IPR033121 -
Vimu10g00543 538 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 14 536 IPR001461 GO:0004190|GO:0006508
Vimu10g00543 538 FunFam Lysosomal aspartic protease 66 308 - -
Vimu10g00543 538 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 282 293 IPR001969 GO:0004190|GO:0006508
Vimu10g00543 538 Pfam Saposin-like type B, region 2 314 346 IPR008138 -
Vimu10g00543 538 PRINTS Pepsin (A1) aspartic protease family signature 232 245 IPR001461 GO:0004190|GO:0006508
Vimu10g00543 538 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Vimu10g00543 538 PRINTS Pepsin (A1) aspartic protease family signature 511 526 IPR001461 GO:0004190|GO:0006508
Vimu10g00543 538 Gene3D Acid Proteases 245 538 IPR021109 -
Vimu10g00543 538 Gene3D - 309 410 - -
Vimu10g00543 538 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 95 106 IPR001969 GO:0004190|GO:0006508
Vimu10g00543 538 Gene3D Acid Proteases 29 238 IPR021109 -
Vimu10g00543 538 Pfam Eukaryotic aspartyl protease 79 537 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00543 Vimu-Chr10 4436847 4440091 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00543 K08245 - gmx:100500551 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00543 10 4436847 4440091 Vimu10g00543 10 4436847 4440091 ECH