Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00536 ATGTTAGCTTCTTCTCTTTCCTTCCTTCATTCCTGCGCATTCCCTTCTTCCGCTTCTTCTTCTTCCTCTTCCTTATCTACACTATCACAACCAAACCCCAAACCTTTCGTCGTTCAAGCCAAAGTTAGGACCCGAAGGGAAGACAGAACTGCGCGTCACACGCGCATCAGAAAGAAGGTTGAAGGGACACCCGAGAGGCCGAGGTTGTCGGTGTTCCGATCCAACAAGCACCTCTCTGTGCAGGTGATTGATGACACCTCGATGCACACGCTTGCTTCGGCTTCCACAATGCAGAAGACCTTTGCTGAAGAGTTTAATTACTCAGCTGGCCCCACAGTTGAAGTAGCAAAAAGGATGGGTGAGATCATTGCAAAATCCTGTTTGGAGAAGGGGATCACTAAGGTAGCCTTTGATCGAGGGGGATACCCATACCATGGCCGTGTTGAAGCACTTGCTGAAGCAGCTCGTGAACATGGCCTAGATTTCTAA 489 0.4928 MLASSLSFLHSCAFPSSASSSSSSLSTLSQPNPKPFVVQAKVRTRREDRTARHTRIRKKVEGTPERPRLSVFRSNKHLSVQVIDDTSMHTLASASTMQKTFAEEFNYSAGPTVEVAKRMGEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHGLDF 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00536 162 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 44 162 IPR005484 GO:0003735|GO:0005840|GO:0006412
Vimu10g00536 162 Hamap 50S ribosomal protein L18 [rplR]. 44 162 IPR004389 GO:0003735|GO:0005840|GO:0006412
Vimu10g00536 162 FunFam 50S ribosomal protein L18 43 162 - -
Vimu10g00536 162 Gene3D - 44 162 - -
Vimu10g00536 162 MobiDBLite consensus disorder prediction 40 67 - -
Vimu10g00536 162 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 39 162 IPR005484 GO:0003735|GO:0005840|GO:0006412
Vimu10g00536 162 MobiDBLite consensus disorder prediction 14 34 - -
Vimu10g00536 162 CDD Ribosomal_L18_L5e 56 160 - -
Vimu10g00536 162 NCBIfam 50S ribosomal protein L18 46 162 IPR004389 GO:0003735|GO:0005840|GO:0006412
Vimu10g00536 162 MobiDBLite consensus disorder prediction 14 67 - -
Vimu10g00536 162 SUPERFAMILY Translational machinery components 45 160 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00536 K02881 - gmx:100778569 270.011