Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00522 ATGACGAGGAATTTTTTTGCAGGTCTGAAGGGAACGATGGCAGCTTCAGAGGAGAATAGTGCACTGTTCCCAATATTCATTTTGACAATAATGGCCATTCCTATAGTGCCATATACAATAACAAAGTTGTGCCGAGCTGCCTCTAAGAAATCAAAGAGCATACACTGTCAGTGCTCTGAATGCTCGCGGTCGGGCAAGTACCATAAGTCGATATTCAAGAGGATTTCGAATGTGTCGACCTGTAGTAATATGACATTGTTACTGCTTTGGGTGATTATGATTATTCTGGTTTATTACATAAAGACCATGAGTCGTGAGATTGAAATTTTCGACCCATTTAGTATTCTAGGCTTAGAGCCTGGAGCGGCAGAGTCTGAAATAAAGAAAAAGTATAGGAGACTTTCAATTCAATACCATCCAGATAAAAATCCGGATCCAGAGGCACACAAGTACTTTGTTGAGTACATTGCCAAGGCTTATCAAGCTCTTACAGATCCAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCCGACAGGGATTTCAAATGGGTATAGCTCTTCCACAATTCCTGCTAAATATTGATGGGGCATCTGGGGGAATACTTCTGCTTTGGATTGTTGGTGTGTGCATTCTCTTGCCACTGGTTATTGCTGTTGTTTATCTCTCCAGATCGTCAAAGTACACTGGCAACTATGTGATGCATCAAACACTTTCCACTTACTATTACCTCATGAAGCCTTCCTTGGCCCCCAGCAAAGTCATGGATGTTTTCATCAAAGCTGCCGAATATATGGAAATTCCAGTTCGTAGGACTGATGATGAACCTCTTCAGAAGCTTTTGTTGTTGGTAAGAAGTGAGTTGAATCTTGACCTCAAGAACATCAAGCAGGAACAGGCTAAGTTTTGGAAGCAGCATCCTGCACTAGTTAAGACAGAGCTGTTAGTTCAAGCTCAGTTGACCCGTGAATTTGCATCCTTGTCTCCATCTTTGCAAAGTGATTTCAGAAGAATTTTAGAAACAGCACCTCGCCTTCTTGAAGAATTAATGAAGATGGCAGTTATACCCCGAAACGCTCAGGGCCATGGTTGGCTGAGGCCTGCAATTGGTGTTGTTGAACTTTCTCAATGTATCATCCAGGCTGTTCCTCTCAGCGCTAGAAAATCTACTGGTGGATCACCTGAAGGCATTGCACCATTTCTACAGTTGCCTCACGTTAGTGAGACTATTATTAAGAAGGTGGCCCGCAAGAAGGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTGACCTGCTTATTCAAACAGGTGGCTTATCTTCTGCTGAAGTGCAAGACATTGAGACTGTACTGGACATGATGCCTTCCTTGACACTTGAGGTAACTTGTGAGACCGAAGGTGAAGAGGGTATACAAGAGGGTGACATTGTGACAATCCATGCTTGGATAAATGTTAAAAGGGGCAATGGCCTGATTGGTGCTCTTCCACACGCCCCATACTACCCATTCCAGAAAGAAGAAAATTACTGGTTTTTGCTTGCAGATTCTACTTCAAACAATGTATGGTTTTCTCAGAAGGTTAGTTTCATGGATGAAGCTGCTGCTCTAACTGCTGCATCTAAGGCAATTGAAGAATCTATGGAGGGGTCAGGAGCAAATGTGAAGGAGACAAGTAGGGCAGTTGCAGAAGCAGTTGAGAAGGTGAAAGGGGGCTCTAGATTGGTATTGGGCAAGTTTCAGGCCCCTTCAGAGGGTAACTACAGTTTGACTTGCTATTGTTTGTGTGATTCTTGGTTGGGCTGTGACAGAAGGACAAATTTGAAGCTCAAAATTTTGAAACGGACTCGGGCTGGCACCAGGGGCGCTGTTTTGGCCGATGAAGGACCTATCACGGAGGATGGAGTTGAGGAGGATGAGGACAATGAGGATGAAGAGTATGATGATGACTATGAAAGTGAGTACAGCGAAGATGAAGAAGATGATCAAAACACAAAAAATAAGCATCAAGCTGCCAATGGCACCGTTAATAAACATGGTCAAGGTGCAGAAAGTTCCGGCTCTGATGAAGAATGA 2094 0.4346 MTRNFFAGLKGTMAASEENSALFPIFILTIMAIPIVPYTITKLCRAASKKSKSIHCQCSECSRSGKYHKSIFKRISNVSTCSNMTLLLLWVIMIILVYYIKTMSREIEIFDPFSILGLEPGAAESEIKKKYRRLSIQYHPDKNPDPEAHKYFVEYIAKAYQALTDPIARENYEKYGHPDGRQGFQMGIALPQFLLNIDGASGGILLLWIVGVCILLPLVIAVVYLSRSSKYTGNYVMHQTLSTYYYLMKPSLAPSKVMDVFIKAAEYMEIPVRRTDDEPLQKLLLLVRSELNLDLKNIKQEQAKFWKQHPALVKTELLVQAQLTREFASLSPSLQSDFRRILETAPRLLEELMKMAVIPRNAQGHGWLRPAIGVVELSQCIIQAVPLSARKSTGGSPEGIAPFLQLPHVSETIIKKVARKKVRTFQELHDMDSQERADLLIQTGGLSSAEVQDIETVLDMMPSLTLEVTCETEGEEGIQEGDIVTIHAWINVKRGNGLIGALPHAPYYPFQKEENYWFLLADSTSNNVWFSQKVSFMDEAAALTAASKAIEESMEGSGANVKETSRAVAEAVEKVKGGSRLVLGKFQAPSEGNYSLTCYCLCDSWLGCDRRTNLKLKILKRTRAGTRGAVLADEGPITEDGVEEDEDNEDEEYDDDYESEYSEDEEDDQNTKNKHQAANGTVNKHGQGAESSGSDEE 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00522 697 MobiDBLite consensus disorder prediction 637 666 - -
Vimu10g00522 697 FunFam DnaJ protein ERDJ2A 237 385 - -
Vimu10g00522 697 Pfam Sec63 Brl domain 234 614 IPR004179 -
Vimu10g00522 697 MobiDBLite consensus disorder prediction 630 697 - -
Vimu10g00522 697 PANTHER SEC63 DOMAIN-CONTAINING 16 666 - -
Vimu10g00522 697 SUPERFAMILY E set domains 466 620 IPR014756 -
Vimu10g00522 697 FunFam DnaJ protein ERDJ2A 401 460 - -
Vimu10g00522 697 SMART dnaj_3 110 168 IPR001623 -
Vimu10g00522 697 Gene3D C2 domain 465 625 IPR035892 -
Vimu10g00522 697 Gene3D DnaJ domain 110 194 IPR036869 -
Vimu10g00522 697 FunFam DnaJ protein ERDJ2A 110 192 - -
Vimu10g00522 697 SUPERFAMILY Sec63 N-terminal domain-like 256 462 - -
Vimu10g00522 697 Gene3D - 237 385 - -
Vimu10g00522 697 PRINTS DnaJ domain signature 168 187 IPR001623 -
Vimu10g00522 697 PRINTS DnaJ domain signature 113 131 IPR001623 -
Vimu10g00522 697 PRINTS DnaJ domain signature 131 146 IPR001623 -
Vimu10g00522 697 PRINTS DnaJ domain signature 148 168 IPR001623 -
Vimu10g00522 697 Pfam DnaJ domain 111 173 IPR001623 -
Vimu10g00522 697 Gene3D - 401 460 - -
Vimu10g00522 697 ProSiteProfiles dnaJ domain profile. 111 176 IPR001623 -
Vimu10g00522 697 SUPERFAMILY Chaperone J-domain 107 204 IPR036869 -
Vimu10g00522 697 SMART Sec63_2 221 616 IPR004179 -
Vimu10g00522 697 MobiDBLite consensus disorder prediction 674 689 - -
Vimu10g00522 697 CDD DnaJ 111 165 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00522 Vimu-Chr10 4176459 4182843 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00522 K09540 - gmx:100809969 1263.44