Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00490 ATGGCTTCGATGAAAGCTTTTGTGTTCACTTTTTTTCTAAGTTTCTTGCTTTACAGTATCAATGGTGTTGAAGTGAGTCATGATGGAAGAGCCATCAAAATTGATGGAAAAAGGAGGGTGCTGATATCTGGATCTATTCACTATCCTAGAAGTACACCAGGGATGTGGCCTGATTTGATAAAGAAAGCAAAAGAAGGAGGCTTGGATGCTATTGAAACATACGTGTTTTGGAATGCACATGAACCTGTTCGTCGTGAATATGATTTTAATGGCAGAAACGATCTCATTAGGTTTCTAAAGACCATTCAAGACGAAGGTCTTTATGCTGTTCTTCGTATCGGTCCCTATGTCTGTGCTGAATGGAATTATGGTTATGGAGATGCTGGAAAAGCTTATATAGATTGGTGTGCAAATATGGCCGAGTCCTTCAACATTGATGTTCCATGGATCATGTGCCAACAATCTGATGCCCCTCAACCAATGATAAATACTTGCAATGGTTGGTATTGTCACGACTTCAAACCCAATAACCCCAACAGTCCTAAGATGTGGACTGAAAATTGGGTTGGCTGGTTCAAGAATTGGGGTGGCAAAGATCCACATAGAACTGCAGAAGATGTTGCCTATTCTGTGGCTAGGTTTTTTCAAACAGGTGGCACGTTCCAAAACTACTACATGTATCATGGTGGGACTAACTTTGGTAGAACAGCTGGAGGTCCATACATTACTACTACATATGATTACGATGCTCCTCTTGATGAATTCGGAAACATAGCCCAACCAAAATGGGGTCACCTCAAAGAACTTCATAGGATTCTGAAATCAATGGAGAATAGTCTAACTAATTATGGAAATGTATCTGAAGTTGATTTGGGTCAATCTGTTAAGGCTACTATGTATATCGCAAATGATTCATCAAGTTGCTTCTTGACTAACACCAACACGACCACTGATGCCATAGTAACATTTAGAGGAAACAAATATAATGTTCCTGCTTGGTCGGTCAGTCTTCTTCCTGATTGTCAAACCGAAGAGTATAACACAGCCAAGGTGAATGTCCAAACCTCTGTCATGATAAAGGGTAAAAACAAAGCAGAAGATGAACCAATAGCTTTGAATTGGGTGTGGAGAGCTGAGAATATTGATGATGCTCTCCTTGGCAAAGGAAATTTCTCTACAAATGGACTTGTTGATCAAAAAATAATTGCTTCTGATAGCAGTGATTATGTTTGGTACATGACAAGACTTGATCTCGACCAAAGTGATCCAGTTTTTTCAGATAATATGTCTCTTAGAATCAATGGCACTGGTCACGTAATCCATGCATTCGTTAATGGACAACATATTGGTTCCCATTGGGCTACATATGGTGTCCGCAGTTATGAATTTGAGACTAAAATGAAGTTGATGCAAGGAAAGAATATTATCAGTCTGCTCAGTGTCACAGTTGGACTACAGAACTACGGACCAAACTATGATAAATGGAGCGCTGGTCTCATTGGGCCCATCAGTGTAGTCAGCAGAAAAGATGATGAAACTGTGGTCAAAGATCTATCCTTAAACAAATGGTCTTACAAGGTTGGGTTGCATGGTTGGGACAACAAATTCTTCAGTGAAGACTCTCCCTATGCTTCTGCTTCCAAATGGGAATCTGAGTACTTACCAACAAAGAGAATGTTGACTTGGTACAAGACCACTTTTAAAGCTCCTCTTGGATCAGAGCCTGTTGTCGTGGATATGCAAGGAATGGGAAAAGGGTTTGCTTGGGTGAATGGCCATAATATTGGTCGCACATGGCCTAGTTATGACGCAAGTGAGGATGGTTGCAGTAATGATCCTTGTGACTATCGTGGTGAATATAGTGACAGAAAATGCGTTAGCAATTGTGGCCAACCCACGCAAAGATGGTACCATGTTCCTCGCTCCTTTATCGAAGATGATGTAAACACATTGGTTTTGTTTGAGGAAATTGGTGGCAATCCATCTCTGGTGAATTTCCAAACCGTTGCTGTTGGGTCTGCTTGTGGAAACACTCATGAGAACAAGAGTTTGGAATTGTCTTGCCATGGACGTCCCATTTCGGATATAAAGTTTGCAAGTTTTGGCAATCCAGAAGGTGAATGTGGTGCATTTAGACAAGGAAGTTGTGAAAGCAAAAATGATGTTTTGTCCATTGTACAGAATGCATGTGTGGGCAAGGAATCGTGCATCATTGATGTTTCAGAAAAAACTTTCGGACCAACAAGTTGTGGAAACATAGTGAAGAGGCTCGCGGTCGAAGCAGTTTGTTAG 2292 0.4088 MASMKAFVFTFFLSFLLYSINGVEVSHDGRAIKIDGKRRVLISGSIHYPRSTPGMWPDLIKKAKEGGLDAIETYVFWNAHEPVRREYDFNGRNDLIRFLKTIQDEGLYAVLRIGPYVCAEWNYGYGDAGKAYIDWCANMAESFNIDVPWIMCQQSDAPQPMINTCNGWYCHDFKPNNPNSPKMWTENWVGWFKNWGGKDPHRTAEDVAYSVARFFQTGGTFQNYYMYHGGTNFGRTAGGPYITTTYDYDAPLDEFGNIAQPKWGHLKELHRILKSMENSLTNYGNVSEVDLGQSVKATMYIANDSSSCFLTNTNTTTDAIVTFRGNKYNVPAWSVSLLPDCQTEEYNTAKVNVQTSVMIKGKNKAEDEPIALNWVWRAENIDDALLGKGNFSTNGLVDQKIIASDSSDYVWYMTRLDLDQSDPVFSDNMSLRINGTGHVIHAFVNGQHIGSHWATYGVRSYEFETKMKLMQGKNIISLLSVTVGLQNYGPNYDKWSAGLIGPISVVSRKDDETVVKDLSLNKWSYKVGLHGWDNKFFSEDSPYASASKWESEYLPTKRMLTWYKTTFKAPLGSEPVVVDMQGMGKGFAWVNGHNIGRTWPSYDASEDGCSNDPCDYRGEYSDRKCVSNCGQPTQRWYHVPRSFIEDDVNTLVLFEEIGGNPSLVNFQTVAVGSACGNTHENKSLELSCHGRPISDIKFASFGNPEGECGAFRQGSCESKNDVLSIVQNACVGKESCIIDVSEKTFGPTSCGNIVKRLAVEAVC 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00490 763 FunFam Beta-galactosidase 378 515 - -
Vimu10g00490 763 Gene3D Glycosidases 126 277 - -
Vimu10g00490 763 SUPERFAMILY Galactose-binding domain-like 520 681 IPR008979 -
Vimu10g00490 763 Gene3D Glycosidases 21 125 - -
Vimu10g00490 763 Gene3D - 530 609 - -
Vimu10g00490 763 FunFam Beta-galactosidase 518 609 - -
Vimu10g00490 763 Pfam Galactose binding lectin domain 686 763 IPR000922 GO:0030246
Vimu10g00490 763 CDD Gal_Rha_Lectin_BGal 679 763 - -
Vimu10g00490 763 ProSiteProfiles SUEL-type lectin domain profile. 678 763 IPR000922 GO:0030246
Vimu10g00490 763 PANTHER BETA-GALACTOSIDASE RELATED 124 708 IPR001944 GO:0004553|GO:0005975
Vimu10g00490 763 SUPERFAMILY Galactose-binding domain-like 335 507 IPR008979 -
Vimu10g00490 763 Pfam Beta-sandwich domain in beta galactosidase 283 351 IPR041392 -
Vimu10g00490 763 FunFam Beta-galactosidase 225 353 - -
Vimu10g00490 763 Gene3D - 314 508 - -
Vimu10g00490 763 Gene3D - 668 763 IPR043159 -
Vimu10g00490 763 SUPERFAMILY (Trans)glycosidases 21 276 IPR017853 -
Vimu10g00490 763 Pfam Glycosyl hydrolases family 35 33 124 IPR031330 -
Vimu10g00490 763 Pfam Glycosyl hydrolases family 35 128 271 IPR031330 -
Vimu10g00490 763 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Vimu10g00490 763 PRINTS Glycosyl hydrolase family 35 signature 585 601 IPR001944 GO:0004553|GO:0005975
Vimu10g00490 763 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Vimu10g00490 763 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Vimu10g00490 763 PRINTS Glycosyl hydrolase family 35 signature 558 572 IPR001944 GO:0004553|GO:0005975
Vimu10g00490 763 Pfam Beta-galactosidase jelly roll domain 406 479 IPR025300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00490 Vimu-Chr10 3794362 3798631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00490 25 763 Glycoside Hydrolase AT1G31740 55.707 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00490 - - mtr:11442869 1212.59