Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00477 ATGGCTTTGCACCGATCAATTTGCGAAACCCTTCTAGCAAAGGTTGGAATTGAAATGCAGAAGAAGTCGACATTGCCACTGAGCGACGCGAATGCGAACAGAAAGAGGAAGGAAGTTTGCAGCAAGGAAACGTTGGTGAAGCTTCTAAGATGGCATTTTGGGTACCCTGATTTTAGGGGCATGCAGTTGGACGCTATTCAGTCGGTGCTTTCAGGAAACGATTGTTTTTGTCTTATGCCAACTGGGGGAGGCAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAACCAGGAATTGTGCTCGTTGATACTACTGTGATGTCTGACTTTTGTTCTGCTGACAGCCTTAATGGTAGGCATCTTTTGGAAAACCAAGTAATGGCACTGAAAGAGAAAGGGATTGCAGCAGATTTTCTCTCCTCAACAAAAACAGCGGATGCTAAAGTAAAGTGCAGTGTGACTGATACTAGGATTTCAATCATGACTGATTCTATCACCTTAAAAGGAAGTAACTTTATTATTGCATCAAGGGTCATCGCCATCTTTACTATTCACGAGGACCTTGATTCTGGAAAACCTTCTACAAGGCTGCTATATGTGACTCCAGAGTTAATAGCAACACCAGGGTTTATGTCAAAGCTCACAAAGATTTATACTAGGGGGCTGCTAAATCTCATTGCCATAGATGAGGCGCATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGCTACCGTAAGCTTTCATCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTTTGACTGCTACTGCTGCGCCAAAGGTTCAGAAGGATGTAGTTGAATCCTTGCGGATGCAAAATCCATTAATACTCAAGTCTTCATTTAATCGTCCAAATATATATTATGAAGTTAGATACAAAGATCTATTGGATGATGCTTTTGCTGATTTATCTAATACACTCAAATCTCTGGGAGATGTCTGTGCAATAGTGTATTGCCTTGAACGTTCAATGTGTGATGACTTATCAAGTAATCTATCCCAAAGTGGTATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTAGATGATTGGATTTCTTCTAAGATAAAAGTTATTGTTGCCACTGTGGCTTTTGGGTATGCTTTTCCATTTTTATTGGCCATAAGATCTACGGATTACAATGATTTCTGGCATGATACTTGGTGCGACATCTACCAAGCTAAAATGCTCTGTGATGGGACTTTTGTAGAGACCAAGGGCCATGGAGCCATGATGTTACTGAGCCTTTGGTCTTCATTCAGAATGGTAAGTGGTGATTTACTATTGGGCATTGATAGAAAGGATGTCAGAATTGTTTGCCATTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCTGGCCGAGCTGGTCGTGATCAATTGCCATCTAGAAGTCTGTTGTACTATGGGATAGACGATCGCAAAAGAATGGAATTTATATTAAGTAAATCGGGGAGCAAGAAGTCATCTAGTTCACAGGAAGAATCATCCAAAATATCCCTGATTGCTTTCAATCAGATAGTTGAATACTGTGAAGGATCTGGATGCCGCAGGAAAAGAATTCTTGAGAGTTTTGGGGAAGAGGTAACTGCATCACTATGTGGAAAAACATGTGATGCCTGCAGACATGCAAACTTAGTTGCCCGATGTTTGGAGGATCTCAAAACTGTTTGTGCTCTGCGTCATAAAAATGTTTCATCTCGAGTTTTTATAACCAGTTCCACTGCCGCAACTACTGGAGAACAGTTATCTGAATTCTGGAATCGGGGAGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGAAGATGGTAATGAGGTTATCAACAACCTAACCAGCTCAAAGCTTCAATCCAGATTGGGAGTAAATGAAAAGCTTGCTATGTTACAACGGGCAGAAGAAAACTTCTATAGAAATAATAACACTTATAAACAGAACAACAAAGGTGACAAGAATGCTATTTCGGATCCAATGCGAGGATCAAGCAGGCAAAGGTTACAAAATGCTCTTAAACAGGGTCACCAACGGCTTGACGACTTCAAGATTGAAGTGGATACGTCGGCATCTTTCCTTGAAGATGAATGCTACAAGAAGTATGGCAAGGCTGGTAAATCATTTTATTATTCGCAAGTGGCAAGTACTGTAAGATGGCTGACGACTGCCACCTCCAGCGAATTGATGAACCGACTTTGTGCAATTAATGCTTCTGCTGAAGCTGAACAGTCCCTTACGCCAGCTGAACAGCCCTTCAAACCGCCACCTACTTTAGATCCTTGTGCAGAAGATACCGGCAATGAATACTCTGACAATGCTAGATCAGAAACTTCTCCATGTATTGTGCCAATGGAAAGCTGTTCGTTTAATAATACCAACTTGCCACAAATACCATCCTTCTCTGAATTCGTAAATAGTAGGAAAACAAAAGGGGAGCAGTTAAATGACACAAAGAAGCATTCAAGAACCGAAAAGAGGATGAGGATGCACTAA 2550 0.411 MALHRSICETLLAKVGIEMQKKSTLPLSDANANRKRKEVCSKETLVKLLRWHFGYPDFRGMQLDAIQSVLSGNDCFCLMPTGGGKSMCYQIPALAKPGIVLVDTTVMSDFCSADSLNGRHLLENQVMALKEKGIAADFLSSTKTADAKVKCSVTDTRISIMTDSITLKGSNFIIASRVIAIFTIHEDLDSGKPSTRLLYVTPELIATPGFMSKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAAPKVQKDVVESLRMQNPLILKSSFNRPNIYYEVRYKDLLDDAFADLSNTLKSLGDVCAIVYCLERSMCDDLSSNLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVIVATVAFGYAFPFLLAIRSTDYNDFWHDTWCDIYQAKMLCDGTFVETKGHGAMMLLSLWSSFRMVSGDLLLGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGIDDRKRMEFILSKSGSKKSSSSQEESSKISLIAFNQIVEYCEGSGCRRKRILESFGEEVTASLCGKTCDACRHANLVARCLEDLKTVCALRHKNVSSRVFITSSTAATTGEQLSEFWNRGEEASGSEEDISDSEDGNEVINNLTSSKLQSRLGVNEKLAMLQRAEENFYRNNNTYKQNNKGDKNAISDPMRGSSRQRLQNALKQGHQRLDDFKIEVDTSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTATSSELMNRLCAINASAEAEQSLTPAEQPFKPPPTLDPCAEDTGNEYSDNARSETSPCIVPMESCSFNNTNLPQIPSFSEFVNSRKTKGEQLNDTKKHSRTEKRMRMH 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00477 849 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 519 IPR001650 -
Vimu10g00477 849 MobiDBLite consensus disorder prediction 762 796 - -
Vimu10g00477 849 Pfam DEAD/DEAH box helicase 61 273 IPR011545 GO:0003676|GO:0005524
Vimu10g00477 849 Coils Coil 684 704 - -
Vimu10g00477 849 SMART ultradead3 54 301 IPR014001 -
Vimu10g00477 849 NCBIfam RecQ family ATP-dependent DNA helicase 184 384 IPR004589 GO:0004386|GO:0006310
Vimu10g00477 849 CDD SF2_C_RecQ 293 488 - -
Vimu10g00477 849 Gene3D - 293 579 IPR027417 -
Vimu10g00477 849 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 285 IPR014001 -
Vimu10g00477 849 CDD DEXHc_RecQ 47 292 - -
Vimu10g00477 849 MobiDBLite consensus disorder prediction 824 849 - -
Vimu10g00477 849 Pfam Helicase conserved C-terminal domain 316 477 IPR001650 -
Vimu10g00477 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 561 IPR027417 -
Vimu10g00477 849 MobiDBLite consensus disorder prediction 664 683 - -
Vimu10g00477 849 Gene3D - 17 292 IPR027417 -
Vimu10g00477 849 SMART helicmild6 336 479 IPR001650 -
Vimu10g00477 849 Pfam RecQ zinc-binding 492 561 IPR032284 -
Vimu10g00477 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 286 IPR027417 -
Vimu10g00477 849 PANTHER DNA HELICASE RECQ FAMILY MEMBER 34 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00477 Vimu-Chr10 3651327 3658561 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00477 K10901 - gmx:100819601 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00477 10 3651327 3658561 Vimu10g00477 10 3651327 3658561 ECH