Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00465 ATGGCGCGGTTTTCAGTGGTGTGGTGCGCGGTGGCGGTGCTATTGTGCGCCGTGGCGAGCGGGTCATGGTTGCAGGATGCGAATCCGATTCGGATGGTGTCGGACGTGGAGGGGCAGGTGATTCAGGTGATAGGTCAGTGCCGGAGCGCGGTGTCGTTTGCTCGGTTCGTCGGGAGGTTCGGGAAGAGTTACCAGAACGAGGAAGAGATGAAGCGGAGGTACGATATATTCGAGCGAAACCTCAGGTTCATCCGTGCCCACAACAAGAAACGTTTGCCCTACACTCTCTCCGTTAATCATTTTACTGATTGGACTTGGGAGGAGTTCCAAACACACAGACTAGGTGCTGCTCAAAATTGCTCTGCCACACTTAAAGGCAACCACAAGCTTACCGATGCTGTTCTTCCTCCAGTGAAAGACTGGAGGCAAGAAAATATAGTGAGCGCAGTTAAAGACCAAGGCAGCTGCGGATCATGCTGGACATTCAGGTTACTTTGGGACCCTGAAACACTCTTTGGAATGAACAACAACACAACCGGGGCTTTAGAAGCAGCCTATGCACAAGCATATGGAAAGAGTATCTCTCTTTCTGAGCAGCAACTAGTGGATTGTGCTGGTCATTTCAACAATTTTGGCTGTAATGGTGGGTTGCCATCACAAGCCTTTGAGTACATTAAATACAATGGTGGGCTTGACACAGAGGAAGCATATCCCTACAAGGGAAAAAATGGTGTCTGCAAATTTTCAGCTGAAAATGTTGGGATTCGAGTCCTTGATTCTGTCAACATCACCTTGGGTGCTGAGGATGAATTAAAACATGCAGTTGCATTTGTTCGACCGGTTAGTGTGGCCTTTGAGGTCGTTGATGGGTTCCGATTCTATGAGAAAGGAGTTTACACCAGTGACACTTGCGGTAACACTCCCATGGATGTGAACCATGCTGTTCTTGCTGTTGGGTATGGAGTTGAAAATGGTGTCCCATACTGGCTCATTAAAAACTCATGGGGAGAATCTTGGGGTGACAACGGCTACTTCAAGATGGAATTGGGGAAGAACATGTGCGCAGGGATCGGAGAACCTCCGTTACTGAACCCTGGAATCGAACCCTCTGTTATGGCGACGGACAGAAACACTTCTCCACCAGCCACATCGCCGGAGGGCAACGCTCTCTTTCTCGATATTCTGCACGAGGCTCCCCTTTTCGCTCACCGCAAGCCTGCTAGGGTTATCGGCAGCGCAGGTTATGCTGCTTTCGCCATTGGAGCTCAGTGGATATTTCTTCCCGTGCAAGGACTCATCTCTCCCGTGCTTTGTAGTTGTGATGTTCTTCTCTTGCTGTTGACAGGTTTGGAACTTGTTGCTGCTTTGTCTCCACTGAGAACTTCAGAAGAATGCCAGAATTTCCTTGTTATGTTGATATGGCTTCTACTAGCTAGAGCGTACCATGATGGTAGGCTCTCTGATCAGCAAATGGCTTTGCTGCAATATCAGCGTGAAAATCTTCATTTTTTGAGCGAGGAGATTCTTCGTTTACAAGAGTGTCTAAGCAAATATGAAGGAACTGATGATCGGAGCACACCACAGGTTGACCTTGCCCATCTTCTGGCAGTACGTGATCAAGAATTACGGACACTTTCTGCTGAGATGAACCAAGTGCAATCTGAGTTGAGGCTTGCCCGGTCCTTGATTGCTGAAAGGGAGTCAGAGATCCAACATTTTCGCACGACGAACAATCAGTATGTTGAAGAGAACGAAAGACTAAGAGCTATTTTAGGGGAATGGAGCACCCGAGCTGCCAAGACTTTTTTATTATTACAATTAAAGCTTGAGCGGGCACTGGAGGCTGAACGGATGTCAACTCTTGAATTACAAAGGAAACTTTCAACGCTAAGAAGTCAATCATACACATCAGCAGAAGCCACCGAACTTGGAGCTTAA 1938 0.4788 MARFSVVWCAVAVLLCAVASGSWLQDANPIRMVSDVEGQVIQVIGQCRSAVSFARFVGRFGKSYQNEEEMKRRYDIFERNLRFIRAHNKKRLPYTLSVNHFTDWTWEEFQTHRLGAAQNCSATLKGNHKLTDAVLPPVKDWRQENIVSAVKDQGSCGSCWTFRLLWDPETLFGMNNNTTGALEAAYAQAYGKSISLSEQQLVDCAGHFNNFGCNGGLPSQAFEYIKYNGGLDTEEAYPYKGKNGVCKFSAENVGIRVLDSVNITLGAEDELKHAVAFVRPVSVAFEVVDGFRFYEKGVYTSDTCGNTPMDVNHAVLAVGYGVENGVPYWLIKNSWGESWGDNGYFKMELGKNMCAGIGEPPLLNPGIEPSVMATDRNTSPPATSPEGNALFLDILHEAPLFAHRKPARVIGSAGYAAFAIGAQWIFLPVQGLISPVLCSCDVLLLLLTGLELVAALSPLRTSEECQNFLVMLIWLLLARAYHDGRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYEGTDDRSTPQVDLAHLLAVRDQELRTLSAEMNQVQSELRLARSLIAERESEIQHFRTTNNQYVEENERLRAILGEWSTRAAKTFLLLQLKLERALEAERMSTLELQRKLSTLRSQSYTSAEATELGA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00465 645 CDD Peptidase_C1A 136 359 IPR039417 -
Vimu10g00465 645 PRINTS Papain cysteine protease (C1) family signature 313 323 IPR000668 GO:0006508|GO:0008234
Vimu10g00465 645 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Vimu10g00465 645 PRINTS Papain cysteine protease (C1) family signature 328 334 IPR000668 GO:0006508|GO:0008234
Vimu10g00465 645 Pfam Papain family cysteine protease 136 355 IPR000668 GO:0006508|GO:0008234
Vimu10g00465 645 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 328 347 IPR025661 -
Vimu10g00465 645 PANTHER TRANSMEMBRANE PROTEIN 192 372 450 IPR029399 -
Vimu10g00465 645 SMART pept_c1 135 364 IPR000668 GO:0006508|GO:0008234
Vimu10g00465 645 SMART Inhibitor_I29_2 53 109 IPR013201 -
Vimu10g00465 645 Coils Coil 542 562 - -
Vimu10g00465 645 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Vimu10g00465 645 FunFam Cysteine proteinase 2, putative 46 363 - -
Vimu10g00465 645 SUPERFAMILY Cysteine proteinases 51 358 IPR038765 -
Vimu10g00465 645 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 311 321 IPR025660 -
Vimu10g00465 645 Gene3D Cysteine proteinases 45 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00465 Vimu-Chr10 3523905 3536677 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00465 K01366 - gmx:547734 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00465 10 3523905 3536677 Vimu10g00465 10 3523905 3536677 ECH