Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00459 ATGAAGATAGTTCTGAGCATCTTCTTGAGTTTATCACTGCTCTCTCTCTCCCACGCTTCTGTGGTAGATTTCTGTGTGGCAGATTACACAGCTCCCAATGGCCCTGCAGGCTACTCATGCAAGAAGCCTGCACACGTGACAGTGAATGACTTTGTCTACTCTGGCCTTGGCACTGCTGGAAACACTTCAAACATCATCAAAGCTGCAGTGACTCCAGCTTTTGATGCTCAATTTCCTGGTGTCAATGGCCTTGGCATTTCTGTTGCACGTTTGGACTTGGCACCCGATGGGGTTATCCCACTCCACACACACCCTGGAGCCTCAGAACTGTTGGTTGTTGTGGAGGGTCAAATCTGTGCTGGATTCGTTGACTCCGGCAACAATGTGTACCTCAAAACCCTCGAAAAGGGTGACATCATGGTGTTCCCTAAGGGCTTGCTGCACTTCCAAATCAACTCTGGTAACTCTCAGGCTTTAGCTTTTGTGAGCTTCAGCAGTGCCAACCCTGGCCTCCAGATTCTCGACTTTGCTTTGTTCAAGAGTGATTTCCCCACTGAACTCATCACCGAAACCACTTTCATTGATGCTGCTGTGGTCAAGAAGCTCAAGGGTGTTCTTGGAGGATCAGGTTAA 633 0.4882 MKIVLSIFLSLSLLSLSHASVVDFCVADYTAPNGPAGYSCKKPAHVTVNDFVYSGLGTAGNTSNIIKAAVTPAFDAQFPGVNGLGISVARLDLAPDGVIPLHTHPGASELLVVVEGQICAGFVDSGNNVYLKTLEKGDIMVFPKGLLHFQINSGNSQALAFVSFSSANPGLQILDFALFKSDFPTELITETTFIDAAVVKKLKGVLGGSG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00459 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 203 - -
Vimu10g00459 210 Pfam Cupin 55 198 IPR006045 -
Vimu10g00459 210 SUPERFAMILY RmlC-like cupins 21 204 IPR011051 -
Vimu10g00459 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Vimu10g00459 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Vimu10g00459 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Vimu10g00459 210 Gene3D Jelly Rolls 18 209 IPR014710 -
Vimu10g00459 210 SMART Cupin_1_3 54 200 IPR006045 -
Vimu10g00459 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Vimu10g00459 210 FunFam Auxin-binding protein ABP19a 18 209 - -
Vimu10g00459 210 CDD cupin_OxOx 21 206 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00459 Vimu-Chr10 3483454 3484086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00459 1 209 Miscellaneous Gene Families AT5G20630 67.619 5.08e-101 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00459 - - gmx:100806553 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01491 7 14110213 14119502 Vimu10g00459 10 3483454 3484086 PCT