Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00456 ATGGCGTCGGTGTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTGGATCAGCTTCCCCGTGATGCTTCGGACATCCTCGACATCCTTAAGGCTGAACAAGCCCCTCTCGATCTCTGGCTCATCATTGCGAGGGAGTACTTCAAGCAAGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGACTATTATGCTGATGTTAGATATGAGAGGATAGCTATCTTAAATGCCCTAGGAGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAACGAGAAAAGGAGGAGCATTTTATTTTGGCAACGCAATACTACAACAAAGCATCTAGGATTGACATGCATGAGCCCTCCACCTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGGGAAGTAGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGTCCGTGATAATGTTCCTGCTCTTTTGGGCCAGGCTTGTGTTGAGTTCAATCGTGGACGATACTCGGATTCACTTGATCTGTATAAGAGAGCATTGCAAGTGTTTCCCAATTGCCCGGCAGCTGTTAGACTTGGCATAGGTCTATGCCGCTACAAATTAGGTCAATTTGAGAAGGCTCAGCAAGCATTTGAGCGAGTTTTACATGCAAATCCAGAAAATGTTGAGGCTCTAGTTGCCCTTGCAATAATGGACTTGCGTACTAATGAAGCTACTGGTATCAGGAAGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGTCAACATTTTTTAGTTGAGCAACTGACTGAAACTGCATTGGCTGTTACCAATCACGGGCCAACAAAGTCTCACTCATACTACAATTTAGCACGGTCGTACCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCACGAATTTGTCTTTCCTTATTATGGTCTATGGCCATGGTGCGGTCTGGGACAAGTGCAGATAAAGTTGGGAGATTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCTTGGAGGTATACCCGGATAATTGTGAGACATTGAAAGCGCTTGGGCATATATATGTTCAGCTTGGTCAAACGGACAAAGGCCAGGACTTTATTAGGAGAGCTACAAAAATTGATCCGCGTGATGCCCAGGCATTTCTTGAGCTGGGAGAATTGTTAATTCTTTCCGACACAGGAGCTGCACTTGATGCATTCAAAACTGCTCGAACTCTTTTTAAGAAGGGAAGTCAAGAAGTACCAATTGAATTACTAAATAATGTTGGCGTGCTTCAGTTTGAAAGGGGTGAATTTGAGCTTGCCCAACAAACATTTAAGGAGGCTCTAGGTGATGGTGTTTGGTTATCTTTCATCAATGAGGAAAATAAGTCTTCTGTTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCATGACCTTGAAAGCAATGGTCATCATGTAGAAGTACCTTGGGATAAAGTCACCGTACTTTTTAACCTGGCTAGGTTACTTGAACAGTTAAATGAATCTGGAACCGCCAGCATTTTGTATCGCCTTATCTTGTTCAAGTACCCAGACTATATTGATGCGTATTTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTCTATTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATGACAAGTGTCCCAATGCATTATCAATGCTTGGTGAGCTGGAGTTGAAAAATGATGATTGGGTAAAGGCAAAAGAAACACTCCGAGCTGCTAGTGATGCAACGGATGGCAAGGACCCATATGCTACTCTCTCTCTGGGAAACTGGAACTACTTTGCAGCAGTTCGCAATGAAAAGAGAAATCCCAAGCTAGAGGCTACTCATTTGGAGAAGTCCAAAGAACTTTATACTAGAGTTCTGATTCAGCATTCTTCTAATTTATATGCTGCCAATGGTGCTGCGGTAGTGTTAGCGGAAAAAGGTCATTTTGATGTGTCAAAGGATATCTTTACACAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCCCATGTTTATTTTGCTCAGGGGAATTTTGCTTTGGCTGTGAAAATGTACCAAAACTGCTTGCGGAAGTTTTATCATAACACAGACTCTCAAATACTTCTGTATTTAGCTCGTACCCATTATGAGGCTGAACATTGGCAAGACTGCATAAAAACTCTACTGAGAGCCATCCATTTGGCACCCTCAAACTATACTTTAAGGTTTGATGCTGGGGTTGCAATGCAAAAATTTTCAGCATCAACATTACAAAAAGCAAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCTGAGCTGCAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAACCTACACATTCATGGGTTTGATGAGAAGAAAATTGACACTCACGTTGGATACTGCAACCACTTACTTTCGGCTGCTAAAGTTCATCTTGAAGCTGCTGAGCGTGAAGAGCAGCAAGTACGGCAGAGACAAGAACTTGCTCGTCAGGTTGCATTGGCAGAGGAAGCTCGACGAAAGGCTGAAGAGCAAAGGAAGTTTCAGATGGAAAGGAGAAAACAAGAAGATGAACTAAAGCGAGTGCAACAACAGGAGGAACATTTTAAGCGTGTTAAGGAGCAATGGAAGAGCAGCACTCATTCAAAACGGAGAGAAAGATCAGATGATGAAGAGGGAGGCACCGGTGAGAAGAAGAAAAGAAAAAGTGGAAAGAAGAGAAAGAAGGATAAGCATTCAAAATCACGCTATGACACGGAGGAACCGGAAGCCGATATGATGGATGAACAAGAAATGGAGGAGGAAGAAGCTGACGTATACAGAGAGGAACCTCAGACTGTGATGAATGATGAAGAGGAGGAAAATGCTCAGGGTCTTCTTGCTGCAGCTGGGCTTGAAGATTCCGATGCAGATGAGGAGATGGCTGCACCATCCTCAAGCATAGCTCGGCGAAGGCAAGCATTATCGGAATCTGATGATGATGATGAACCATTGCAAAGGCAGTCAAGTCCAGCAAGAGAAAATTCTGGTGACATGCAGGAGAGTGATGGAGAAATCAGAGATGTAGATAAGACACATGGAGATGATGGCAGTGATGAGGACAAACAATATTGA 3282 0.4317 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGVRDNVPALLGQACVEFNRGRYSDSLDLYKRALQVFPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLHANPENVEALVALAIMDLRTNEATGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLWPWCGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRRATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGSQEVPIELLNNVGVLQFERGEFELAQQTFKEALGDGVWLSFINEENKSSVDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNESGTASILYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDPYATLSLGNWNYFAAVRNEKRNPKLEATHLEKSKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEHWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFKRVKEQWKSSTHSKRRERSDDEEGGTGEKKKRKSGKKRKKDKHSKSRYDTEEPEADMMDEQEMEEEEADVYREEPQTVMNDEEEENAQGLLAAAGLEDSDADEEMAAPSSSIARRRQALSESDDDDEPLQRQSSPARENSGDMQESDGEIRDVDKTHGDDGSDEDKQY 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00456 1093 MobiDBLite consensus disorder prediction 1067 1093 - -
Vimu10g00456 1093 SUPERFAMILY HCP-like 203 438 - -
Vimu10g00456 1093 Coils Coil 861 928 - -
Vimu10g00456 1093 FunFam Rna polymerase-associated protein ctr9 657 841 - -
Vimu10g00456 1093 Gene3D Tetratricopeptide repeat domain 512 658 IPR011990 GO:0005515
Vimu10g00456 1093 SUPERFAMILY TPR-like 455 709 IPR011990 GO:0005515
Vimu10g00456 1093 FunFam protein CTR9 homolog 9 336 - -
Vimu10g00456 1093 SMART tpr_5 755 788 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 197 230 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 382 415 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 348 381 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 162 195 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 530 563 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 564 597 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 719 752 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 305 338 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 128 161 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 598 631 IPR019734 GO:0005515
Vimu10g00456 1093 SMART tpr_5 454 494 IPR019734 GO:0005515
Vimu10g00456 1093 SUPERFAMILY TPR-like 115 246 IPR011990 GO:0005515
Vimu10g00456 1093 SUPERFAMILY HCP-like 351 794 - -
Vimu10g00456 1093 ProSiteProfiles TPR repeat profile. 719 752 IPR019734 GO:0005515
Vimu10g00456 1093 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Vimu10g00456 1093 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Vimu10g00456 1093 MobiDBLite consensus disorder prediction 978 996 - -
Vimu10g00456 1093 Gene3D Tetratricopeptide repeat domain 343 497 IPR011990 GO:0005515
Vimu10g00456 1093 Gene3D Tetratricopeptide repeat domain 7 340 IPR011990 GO:0005515
Vimu10g00456 1093 ProSiteProfiles TPR repeat profile. 348 381 IPR019734 GO:0005515
Vimu10g00456 1093 Pfam Tetratricopeptide repeat 724 787 - -
Vimu10g00456 1093 Gene3D Tetratricopeptide repeat domain 659 841 IPR011990 GO:0005515
Vimu10g00456 1093 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1090 IPR031101 GO:0006355|GO:0016570
Vimu10g00456 1093 Pfam Tetratricopeptide repeat 360 418 - -
Vimu10g00456 1093 Pfam Tetratricopeptide repeat 175 236 - -
Vimu10g00456 1093 MobiDBLite consensus disorder prediction 1042 1057 - -
Vimu10g00456 1093 Coils Coil 807 827 - -
Vimu10g00456 1093 MobiDBLite consensus disorder prediction 901 955 - -
Vimu10g00456 1093 FunFam protein CTR9 homolog 513 656 - -
Vimu10g00456 1093 ProSiteProfiles TPR repeat profile. 382 415 IPR019734 GO:0005515
Vimu10g00456 1093 MobiDBLite consensus disorder prediction 901 1093 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00456 K15176 - gmx:100794371 1962.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00456 10 3416031 3432016 Vimu10g00456 10 3416031 3432016 ECH