Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00449 ATGGCTTCCACTTCTGCACTTTCAATGGCTATGCCGGTAACTTGTGCCAGCCACAAGAAGGTGCTTCCTACCTCAGATGCGTTCTTCAAGCCACTGCCTCTACAGTCTTCAAAGGCACTGAGAGCTTCAAATCCCAATGGAAGGTTTCAAGTGAGAGCCTCCATGAAGGAGAAAGTTGTCACAGGGCTCACAGCAGCTGCATTGACGGCTTCAATGATGGCTCCTGATGTGGCTGAGGCTGCTGTCTCACCTTCTCTCAAGAACTTTTTGCTCAGTATCGCCGCCGGTGGAGTTGTTGTTGTGGCCATTATTGGTGTTGTAATTGGTGTTGCCAATTTCGATCCCGTCAAACGAAGCTGA 360 0.4972 MASTSALSMAMPVTCASHKKVLPTSDAFFKPLPLQSSKALRASNPNGRFQVRASMKEKVVTGLTAAALTASMMAPDVAEAAVSPSLKNFLLSIAAGGVVVVAIIGVVIGVANFDPVKRS 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00449 119 Gene3D Single helix bin 81 119 - -
Vimu10g00449 119 PANTHER OS07G0673550 PROTEIN 1 119 - -
Vimu10g00449 119 Pfam Photosystem II reaction centre X protein (PsbX) 82 119 IPR009518 GO:0009523|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00449 Vimu-Chr10 3369949 3370308 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00449 - - gmx:100306291 166.392