Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00436 ATGCCCCACCGTCGCTCCTGGCACTCATCGCCACCCTTACTTAGCCCTCCACTCATAATCATTCTCTTTCCCATCGTCATTCTCACCATCCTCTTCCTCGCTCTGCCGCCGCTCCTCTCCGCCGCCACGCGCCTCATACGCCCTGCCTCCGTCAAGACCAGCTGGGACTCCCTCAACATCCTCCTCGTCGTTTTCGCAATTCTGTGCGGGGTCTTTGCCAGACGAAACGACGACGAACAGACCCCAAGAAATAATCACCACGACGCCGTTCCGGATCGAAACGCTGCGTTTCAACAAGTCCCTTCCGAAGGACAACCTCAGTGGCTTGGGTTCACTGGGGAGAGAAAGGAGTATATTAATGATACCTCTCTCAACCGGTTTCAGTCACCTGCAACCGGTGATACACGGTTGAGGATGAGAAGAAACAGTAGCTCTTATCCAGATCTGCGCCAGTGGGAAACCGGCGATGACCGGTACAAGTTCCGCTTCTTTGATGACTTTGAAATCGACAAGCAGTTCCGCACGCCGGCTAGGGACCATTTCCCCGCTTTCGACCATCGCAAACGATTGCCGGAATCACCACCATCACTGTCACCACAACCACAACATCAGCATCAACACCACCAACAACAAGACGACGAAGAAAAGGAAATTCCGGTCGATACCTTCGAAACTCGTCCTTCATCACCGCCGGTGAAATCAACTACGCCAACTCCTCCACCACCGCCGCCTCCTCCTCCTCCTCCTCAGCCGGAATCGACCCGTCGCAATGCACGACGGTCGCATCGGAAAACAGAGAGAGTCAGTGAGATAACCGTCGAGCTCGACGAGTGCGAGTTCACAACGATCCGCTCTCCGCCTCCGGCTCCTCCGACACCGCCTCCGCCGTCGGCGAAGGTGCGATCGGAGCGTAAGAGCGAGCGAAAGAAGAGCAATGTGAAGAGAGAGATAGCGATGGTTTGGGCTTCAGTTCTCTCCAACCAGCGAAAGAAAAAGAAGAAGCAAAGAGCAAAAAATAACCACGATCAACATTACGAAGATAATGCCGACGAATTAACGAACAGCACGACAGTGCCACCACCAACGCCGCCACCTCCACCACCTCCTCCGCCACCAACTTCAATGTTCCAAAGTCTATTCCGAAAAGGACTAGGCAAGAGCAAGAAAATCCACTCAGTGTCACCGCCACCACCCCCGCCACCTCCTCCACCGTCGAAGCGGTGGTCAAAGCGCAAGAGCCACATCCCTCCTCCGTCTCCTCCGTCTCCTCCACGCCGTCGAAACACGGGGCGACCACCGCTGCCGAGCAGAAGCGTCAATTTCCACGACGAGATTCACGAGTCAGCTAACGTGGGCAACCAGTCGCCGCTGATTCCGGTTCCGCCACCGCCTCCACCGTTCAAGGTGAAGGCGATGAAGTTCGTGGTCCGTGGAGATTTCGTGAGGATACGCAGCAACCAGAGCTCGCGGTGTAGCTCTCCAGAAAGGGAGGAAATTATAATGAATGTATCAGAAAGTACAGTGAGTGAGAGCCTTACGGATGGTAACGGCGTTTTCTGTCCCAGCCCCGACGTGAACATTAAAGCTGAATCTTTCATCGCTAAGCGCAGGGGAGAGTGGAAGCTCGAAAAACTGAACTCCTTGAAGGAGAAAAGCAATGTCTCATTGCCTCGTAGGTTGTAG 1683 0.546 MPHRRSWHSSPPLLSPPLIIILFPIVILTILFLALPPLLSAATRLIRPASVKTSWDSLNILLVVFAILCGVFARRNDDEQTPRNNHHDAVPDRNAAFQQVPSEGQPQWLGFTGERKEYINDTSLNRFQSPATGDTRLRMRRNSSSYPDLRQWETGDDRYKFRFFDDFEIDKQFRTPARDHFPAFDHRKRLPESPPSLSPQPQHQHQHHQQQDDEEKEIPVDTFETRPSSPPVKSTTPTPPPPPPPPPPPQPESTRRNARRSHRKTERVSEITVELDECEFTTIRSPPPAPPTPPPPSAKVRSERKSERKKSNVKREIAMVWASVLSNQRKKKKKQRAKNNHDQHYEDNADELTNSTTVPPPTPPPPPPPPPPTSMFQSLFRKGLGKSKKIHSVSPPPPPPPPPPSKRWSKRKSHIPPPSPPSPPRRRNTGRPPLPSRSVNFHDEIHESANVGNQSPLIPVPPPPPPFKVKAMKFVVRGDFVRIRSNQSSRCSSPEREEIIMNVSESTVSESLTDGNGVFCPSPDVNIKAESFIAKRRGEWKLEKLNSLKEKSNVSLPRRL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00436 560 MobiDBLite consensus disorder prediction 206 222 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 178 192 - -
Vimu10g00436 560 Coils Coil 327 347 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 392 406 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 125 151 - -
Vimu10g00436 560 PANTHER COTTON FIBER (DUF761) 275 551 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 178 464 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 232 253 - -
Vimu10g00436 560 PRINTS Proline rich extensin signature 283 300 - -
Vimu10g00436 560 PRINTS Proline rich extensin signature 193 205 - -
Vimu10g00436 560 PRINTS Proline rich extensin signature 228 240 - -
Vimu10g00436 560 PRINTS Proline rich extensin signature 347 372 - -
Vimu10g00436 560 PRINTS Proline rich extensin signature 240 261 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 284 298 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 125 150 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 414 430 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 300 315 - -
Vimu10g00436 560 MobiDBLite consensus disorder prediction 357 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00436 Vimu-Chr10 3261553 3263235 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00436 - - pvu:PHAVU_009G229500g 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00436 10 3261553 3263235 Vimu10g00436 10 3261553 3263235 ECH