Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00422 ATGGATTTGGAAGAGGAGCAGGAGTACGAGGAGCAAATGATGGAGGACGAAGAGGACGAGGACGAGATCACGCAGGAAGACGCGTGGGCCGTTATCTCGGCGTACTTCGAAGAGAAAGGCCTCGTTCGTCAGCAGCTCGATTCCTTCGACGAGTTCATCCAAAACACCATGCAGGAAATCGTCGATGAGTCTGCTGACATTGAAATTCGACCCGAGTCTCAGCACAATCCTGGTCACCAATCCGATTTCGCAGAGACTATTTATAAAATCAGTTTCGGTCAGATTTACTTGAGTAAGCCTATGATGACAGAGTCTGATGGAGAAACCGCCACCTTGTTTCCCAAGGCTGCTAGGTTAAGGAACCTTACGTATTCAGCTCCTCTGTATGTTGATGTCTCTAAGAGGGTTATAAAGAAGGGGCATGATGGTGAAGAGGTCACCGAGACTCAGGATTTCACCAAAGTTTTCATTGGCAAGGTTCCTATAATGCTTCGGTCTAGTTACTGCACATTATACCAGAATTCAGAGAAGGATTTGACTGAGCTTGGGGAATGCCCGTATGATCAAGGTGGGTATTTCATTATTAATGGGAGTGAGAAAGTTCTGATTGCTCAGGAGAAGATGAGCACCAACCATGTCTATGTCTTTAAGAAGAGGCAGCCAAACAAGTATGCCTACGTGGCTGAAGTTCGGTCCATGGCGGAATCACAGAACAGACCACCCAGTACTATGTTTGTGCGCATGCTTTCTCGGACTAGTTCCAAAGGGGGTTCTTCAGGACAATATATACGTGCCACTCTTCCTTATATTCGAACTGAAATTCCCATCATTATTGTGTTTCGAGCATTGGGGTTTGTTGCTGATAAAGATATATTAGAGCATATATGCTATGACTTTTCGGACACTCAAATGATGGAGTTGCTACGTCCTTCTCTGGAAGAAGCGTTTGTAATTCAAAATCAACAGGTTGCACTTGACTACATTGGGAAAAGAGGAGCCACTGTTGGTGTAACCAAGGAAAAGAGAATTAAGTATGCTAAGGAGATCCTTCAAAAGGAGATGCTTCCTCATGTTGGCATTGGGGAATATTGTGAGACCAAGAAAGCTTACTATTTTGGATATATCATTCACCGGCTACTACTCTGTGCACTTGGGCGGAGAGCTGAGGATGATAGGGATCATTACGGAAACAAGAGGCTGGATCTGGCCGGTCCTTTACTTGGTGGCCTTTTTAGAATGCTATTCAGAAAGCTAACAAGAGATGTCAGGGCGTATGTACAGAAGTGTGTTGATAATGGGAAAGATGTTAATCTGCAATTTGCTATCAAAGCAAAAACCATCACAAGTGGCCTTAAATACTCACTTGCTACTGGTAATTGGGGGCAAGCAAATGCTGCAGGGACTAGAGCTGGAGTTTCACAGGTGCTGAACCGCTTAACCTATGCATCCACTTTATCGCACTTGCGAAGACTGAATTCCCCAATAGGGCGTGAAGGGAAGTTGGCCAAACCAAGACAATTGCATAATTCACAATGGGGAATGATGTGTCCAGCAGAAACACCCGAAGGACAAGCCTGTGGACTGGTCAAGAATCTGGCATTGATGGTCTACATAACAGTTGGTTCAGCTGCATATCCTATTTTAGAGTTTTTGGAAGAATGGGGCACAGAGAATTTTGAGGAAATTTCTCCTGCAGTGATTCCCCAAGCAACAAAAATTTTTGTAAACGGTTGCTGGATGGGTATCCATCGTGATCCTGATATGTTGGTGAGAACATTAAGAAAGCTGAGACGAAGGGTTGATGTTAACACTGAAGTTGGGGTTGTCAGAGATATCCGTCTTAAAGAGTTGCGTATATATACAGACTATGGTCGTTGCAGTCGTCCTTTATTCATTGTGGATAAGCAAAGGCTTCTCATAAAGAAGAAGGATATTCATGCTTTACAACAAAGGGAATCCCCTGAAGAGGGTGGATGGCATGATCTAGTGTCCAAGGGCTATATAGAATATATTGACACGGAAGAAGAAGAGACTACAATGATTTCCATGACAATTAATGATCTTGTACAAGCTAGGATCAATCCAGAAGAAGCATATTCTGATACGTATACTCATTGTGAAATCCACCCATCACTGATTTTGGGTGTATGTGCGTCCATCATACCATTTCCTGATCATAATCAGTCCCCACGTAATACGTATCAGTCTGCAATGGGAAAGCAAGCAATGGGAATATATGTTACCAACTACCAGTTTCGGATGGACACCTTGGCCTATGTTTTATATTATCCACAAAAGCCATTGGTCACTACAAGAGCCATGGAGCATCTTCATTTCCGTCAACTCCCAGCTGGAATTAATGCCATCGTGGCCATTTCCTGTTATTCTGGTTACAATCAAGAAGATTCTGTGATCATGAACCAATCATCAATAGACCGTGGGTTCTTTCGGTCTTTGTTTTTCCGTTCATATAGGGATGAAGAGAAGAAGATGGGAACCCTAGTCAAAGAAGATTTTGGCCGTCCAGATAGAGCTAACACCATGGGAATGAGACACGGTTCTTATGATAAGCTGGATGATGATGGTCTTGCACCACCAGGCACAAGAGTATCTGGAGAGGATGTTATTATTGGAAAGACCACCCCAATATCTCAAGAGGAGGCACAGGGACAAGCTTTACGATACACTAGGCGTGATCACAGCATAAGCTTACGTCACAGTGAAACTGGAATTGTTGATCAAGTTTTGCTGACAACAAATGCTGATGGATTGAGATTTGTGAAAGTCCGAGTGAGATCTGTTCGTATACCACAGATTGGTGACAAATTCAGTAGTAGACATGGTCAGAAGGGTACTGTTGGTATGACTTATACGCAAGAAGACATGCCCTGGACTGTGGAAGGCATCACCCCTGATATTATTGTCAATCCACATGCCATTCCTTCTCGAATGACAATTGGTCAGCTTATCGAGTGTATCATGGGGAAGGTGGCAGCTCACATGGGAAAAGAAGGAGATGCTACTCCTTTTACAGATGTTACTGTGGACAATATCAGCAAAGCTCTGCACAAATGTGGGTATCAAATGCGTGGTTTTGAGACTATGTACAATGGTCATACAGGTAGACGTCTCAGTGCAATGATTTTCCTTGGTCCTACATATTACCAAAGACTGAAGCACATGGTTGACGACAAGATCCATTCTCGTGGTCGGGGTCCTGTGCAGATCCTCACAAGGCAACCTGCTGAGGGACGGTCACGAGATGGAGGTCTTCGATTTGGAGAGATGGAACGAGATTGCATGATAGCTCATGGAGCTGCTCACTTCCTGAAGGAAAGGTTGTTTGATCAAAGTGATGCATATAGGGTTCATGTATGTGAGCAATGTGGGTTGATAGCTATTGCAAATCTCAAGAAGAATTCCTTTGAGTGCAGGGGGTGCAAAAACAAAACTGACATTGTTCAGGTTTTCATTCCGTATGCTTGTAAACTCCTCTTCCAAGAGTTAATGGCTATGGCTATAGCTCCAAGAATGCTTACAAAGGACCTCAAATCTAAAAGGAAGGACCAAAAGAAGAAGGGAGCCTGA 3588 0.4373 MDLEEEQEYEEQMMEDEEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEEGGWHDLVSKGYIEYIDTEEEETTMISMTINDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGCKNKTDIVQVFIPYACKLLFQELMAMAIAPRMLTKDLKSKRKDQKKKGA 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00422 1195 Pfam RNA polymerase Rpb2, domain 4 573 634 IPR007646 GO:0003677|GO:0003899|GO:0006351
Vimu10g00422 1195 Pfam RNA polymerase Rpb2, domain 2 210 401 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vimu10g00422 1195 Pfam RNA polymerase beta subunit 40 449 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vimu10g00422 1195 CDD RNA_pol_B_RPB2 41 1178 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vimu10g00422 1195 FunFam DNA-directed RNA polymerase subunit beta 211 391 - -
Vimu10g00422 1195 FunFam DNA-directed RNA polymerase subunit beta 33 220 - -
Vimu10g00422 1195 Gene3D - 748 936 IPR014724 GO:0003899
Vimu10g00422 1195 Pfam RNA polymerase Rpb2, domain 5 659 710 IPR007647 GO:0006351
Vimu10g00422 1195 Gene3D RNA polymerase alpha subunit dimerisation domain 1074 1182 - -
Vimu10g00422 1195 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 20 1178 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vimu10g00422 1195 Gene3D - 388 613 - -
Vimu10g00422 1195 FunFam DNA-directed RNA polymerase subunit beta 1074 1182 - -
Vimu10g00422 1195 MobiDBLite consensus disorder prediction 1 24 - -
Vimu10g00422 1195 FunFam DNA-directed RNA polymerase subunit beta 806 936 - -
Vimu10g00422 1195 Pfam RNA polymerase Rpb2, domain 6 717 1087 IPR007120 GO:0003677|GO:0003899|GO:0006351
Vimu10g00422 1195 Pfam RNA polymerase Rpb2, domain 3 474 538 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vimu10g00422 1195 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 21 1182 - -
Vimu10g00422 1195 Gene3D - 718 1073 IPR037033 GO:0003677|GO:0003899|GO:0006351
Vimu10g00422 1195 FunFam DNA-directed RNA polymerase subunit beta 928 1073 - -
Vimu10g00422 1195 Pfam RNA polymerase Rpb2, domain 7 1089 1180 IPR007641 GO:0003677|GO:0003899|GO:0006351
Vimu10g00422 1195 FunFam DNA-directed RNA polymerase subunit beta 388 613 - -
Vimu10g00422 1195 Gene3D RNA polymerase Rpb2, domain 2 211 387 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vimu10g00422 1195 Coils Coil 6 26 - -
Vimu10g00422 1195 ProSitePatterns RNA polymerases beta chain signature. 940 952 IPR007121 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00422 Vimu-Chr10 3164732 3175541 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00422 K03010 - gmx:100790162 2298.47