Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00421 ATGGGTGATAGCAGTGTCCCATCTGGGTCTCCAAATGCAAAACCAGATCTTGTTCATGGAGACTCGGCGGTTTCCAACAACGCCTCGTTGGAAACCATTGTGCAAAGTTTCCAAGATTCAATGACTCTTGGTAAGAGGCATAAGTTCTGGGAAACACAACCTGTTGGACAGTACAAGGATGTTGGGGACGCAAGTTTGACTGAAGGCCCCATTGAGCCCCCCACACCTTTGTCTGAGGTTAAGCAGGAGCCTTATAACCTTCCTAGTGCTTATGAATGGACCACATGTGACATGGACTCTTCGGAAACCTGTGATGAGGTTTATGTTCTGCTGAAGAATAACTATGTTGAGGATGATGAAAACATGTTCAGGTTCAACTATTCCAAGGAGTTTCTCAGGTGGGCGTTGCGCGTTCCGGGGTATTACCGGAGTTGGCACATTGGTGTGCGTGCCAAGACCTCGAAGAAGTTGGTTGCTTTCATTAGTGGCGTACCAGCAAGGATCAGAGTTAATGAGGAGGTTGTGAAGATGGCTGAGATCAATTTCTTGTGTGTTCATAAGAAGCTCAGGTCTAAGAGGCTTGCGCCTGTTATGATCAAGGAGGTGACTAGGAGGGTTCATCTGGAAAATATTTGGCAGGCGGCTTATACAGCTGGGGTTGTGCTTCCAACGCCAATCACGACTTGTCAGTATTGGCATCGATCATTGAATCCGAAGAAGCTGATTGATGTCGGGTTTTCAAGGCTTGGTGCTAGGATGACGATGAGTCGCACAATAAAACTTTATAAATTGCCAGATTCTCCTGTTACCCCTGGATTCAGGAAAATGGAGCTTCGGGATGTCCCGGCTGTTACTCGGCTACTTAGAAACTACTTGAGCCAGTTTGTTGTTGCACCTGATTTTGATGAAAATGATGTTGAGCACTGGCTACTTCCCAATGAGAATGTGGTGGATAGTTTCTTGGTGGAGAGTCCGGGGAATCATGAGATCACTGACTTCTGCAGCTTCTATACACTCCCCTCTTCGATCCTTGGAAATCAAAATTACTCAACTTTGAAAGCTGCTTATTCTTATTATAATGTCTCCACCAAAACCCCATTGACTCAGTTGATGAATGATGTGCTAATTGTAGCAAAGCAAAAGGATTTTGATGTTTTCAATGCCTTGGATGTGATGCACAATGAGAGTTTCCTCAAAGAGCTCAAGTTTGGACCGGGAGATGGACAGCTTCACTACTACTTGTACAATTATAGGATTCGTAATGCCTTGAAACCATCTGGACTCGGGCTTGTGCTTTTGTAG 1302 0.4516 MGDSSVPSGSPNAKPDLVHGDSAVSNNASLETIVQSFQDSMTLGKRHKFWETQPVGQYKDVGDASLTEGPIEPPTPLSEVKQEPYNLPSAYEWTTCDMDSSETCDEVYVLLKNNYVEDDENMFRFNYSKEFLRWALRVPGYYRSWHIGVRAKTSKKLVAFISGVPARIRVNEEVVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVVLPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPDSPVTPGFRKMELRDVPAVTRLLRNYLSQFVVAPDFDENDVEHWLLPNENVVDSFLVESPGNHEITDFCSFYTLPSSILGNQNYSTLKAAYSYYNVSTKTPLTQLMNDVLIVAKQKDFDVFNALDVMHNESFLKELKFGPGDGQLHYYLYNYRIRNALKPSGLGLVLL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00421 433 PANTHER N-MYRISTOYL TRANSFERASE 33 433 IPR000903 GO:0004379|GO:0006499
Vimu10g00421 433 FunFam Glycylpeptide N-tetradecanoyltransferase 44 215 - -
Vimu10g00421 433 FunFam Glycylpeptide N-tetradecanoyltransferase 39 433 - -
Vimu10g00421 433 Pfam Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain 243 421 IPR022677 GO:0004379
Vimu10g00421 433 ProSitePatterns Myristoyl-CoA:protein N-myristoyltransferase signature 2. 402 408 IPR022678 GO:0004379
Vimu10g00421 433 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 45 230 IPR016181 -
Vimu10g00421 433 MobiDBLite consensus disorder prediction 1 22 - -
Vimu10g00421 433 Pfam Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain 70 229 IPR022676 GO:0004379
Vimu10g00421 433 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 231 433 IPR016181 -
Vimu10g00421 433 ProSitePatterns Myristoyl-CoA:protein N-myristoyltransferase signature 1. 179 187 IPR022678 GO:0004379
Vimu10g00421 433 PIRSF N-myristl_transf 8 433 IPR000903 GO:0004379|GO:0006499
Vimu10g00421 433 Gene3D - 39 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00421 Vimu-Chr10 3158905 3160206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00421 1 433 Acyl Lipid Metabolism Gene Families AT5G57020 83.641 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00421 K00671 - gmx:100787291 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00421 10 3158905 3160206 Vimu10g00421 10 3158905 3160206 ECH