Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00408 ATGGTGGTGAGGATTCGGCTCTCGCGATTCGGATGCAAGAACAAACCCTTCTATCGGGTCATGGCTGCTGATAGCAGATCTCCCAGAGATGGCAAACACATTGAAGTTCTCGGTTACTACAATGCCTTACCAGGTCAAGATGGTGGCAAGAGAATGGGTCTCAACTTCGAAAGGGTGAAGTATTGGCTTTCTGTTGGAGCTCAGCCTTCAGAGCCTGTGGAACGGCTTCTATTCAGAGCAGGGGTACTGCCCCCACCACCTATGGTGGCAATGGGGCGTAAAGGTGGACTGCGTGATACTCGCCCTGTCGATGCTCTAACTGGGCGTGTGCTGAATAAAGAGAAGCCTGCTGATGATAAGAACAATGACCATGAACATGAAGCTGCTGAAAACCCTTTTTAG 402 0.5025 MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHIEVLGYYNALPGQDGGKRMGLNFERVKYWLSVGAQPSEPVERLLFRAGVLPPPPMVAMGRKGGLRDTRPVDALTGRVLNKEKPADDKNNDHEHEAAENPF 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00408 133 Hamap 30S ribosomal protein S16 [rpsP]. 2 80 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vimu10g00408 133 MobiDBLite consensus disorder prediction 90 133 - -
Vimu10g00408 133 NCBIfam 30S ribosomal protein S16 3 82 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vimu10g00408 133 SUPERFAMILY Ribosomal protein S16 3 95 IPR023803 -
Vimu10g00408 133 FunFam 30S ribosomal protein S16 1 107 - -
Vimu10g00408 133 Gene3D - 1 132 IPR023803 -
Vimu10g00408 133 PANTHER 30S RIBOSOMAL PROTEIN S16 1 124 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vimu10g00408 133 Pfam Ribosomal protein S16 9 70 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vimu10g00408 133 MobiDBLite consensus disorder prediction 111 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00408 Vimu-Chr10 3089144 3090029 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00408 K02959 - gmx:100499851 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00408 10 3089144 3090029 Vimu10g00408 10 3089144 3090029 ECH