Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00403 ATGGCTGTTCTATGTCTATCTAGCATCACACAAGCAAATTTCAAAATCCCCAAAGAAATAGCCTCAAAGTTTAGCAGTGACCCTGAAATCCTTTCACTGGCATCAACAGATTATGGCCACATAGTTCATGAAACTCCATTAAAAGTTTTTGAGCCATCTTCTGTAAGTGATATCTCAAGTTTGATAAATTTCTCAAACTCTCTTCCCACTCCATTCACCATAGCCACCAGAGGCAAAGCTCACTCCATTCTAGGGCAAGCCCAGACACGAAATGGGGTGGTCTTGAACATGACTAACCTCAAAGGGTCACTGATTTCGGTTTCAAATTATTGTGATCGAAAAACATCATTGAATTGTTACGCTGATGTTGGTGGTGAAGTGTTGTGGATTGATGTGTTGCATGCAACCCTAAAACGTGGACTCACACCTTTATCTTGGACTGATTATCTGTATCTGAGTGTTGGAGGAACTCTGTCAAATGCTGGAATCAGTGGCCAAGCCTTTCGATTTGGTCCTCAGATCTCTAATGTTCTTCAACTCGATGTTGTCACAGGAAAAGGAGAGCTTGTGAGTTGCTCTAGGGATAAGAATTCTGAGTTATTTTACGGAGTTCTTGGAGGATTAGGTCAATTTGGTGTAATAACCAGAGCCAGAATACCTCTAGGACCTGCACCAACCAGGGCAAATTTGCAGGTGAAATGGCTCCATCTGCTCTACAACAATTTCAGTGCATTTTCTAGCGACCAAGAACATTTAATCTCCTTCGGTAAAGAGAATGAGACTACTGCAGCAGATTATGTAGAAGGCAAGCTTCTATTCAATCAGCCACCCCTGGAACTTTCCTTTTATCCAGATTCTGACCATCAAAGAATAACTTCACTGGTAACTCAAAATGGCATAATCTACATCATAGAACTTGTCAAATACTATGACAGCAACTCTCAAGCATTCGTGGCCAAGGATGTGGCCGATTTGGTGAAAGGGTTAAAGTTCGTACCAACATTTATGTTCGAAAAAGATGCATCGTACGAGGAGTTTCTGAATAGAGTTTACGAAGAAGAGTTATTTCTAAGGTCAAAAGGACTTTGGGAAATTCCTCACCCCTGGTTGAACATCTGGATTCCAAGATCTCGAATCTCAGATTTTAACGAAGGTGTCTTCAAGAACATTATTCTTAAGCAAAACATTTCTAGCGGAATTTCTCTGATATACCCACTGAACAGAAACAAGTGGGATGATAAGATGTCACCAGTTACACCAGATGAAGATGTTTTCTACGCTGTAAGTCTTTTGCGTTCTACAAGTTCGATAGATATGCTGAAGAAATATCAGACTCAGAACCGACAAATATTAGAGTTTTGTAAGGGTGCTGGTATTAAGATCACGGAATATCTCACTGGGAACAAAACACAACAACAATGGATGGAACACTTTGGCTCAAAATGGAAACTTTTTGCAGATAGAAAAGCTCGATTTGATCCCAAAAGAATATTGTCACCAGGACAAGGGATTTTTTGA 1518 0.4025 MAVLCLSSITQANFKIPKEIASKFSSDPEILSLASTDYGHIVHETPLKVFEPSSVSDISSLINFSNSLPTPFTIATRGKAHSILGQAQTRNGVVLNMTNLKGSLISVSNYCDRKTSLNCYADVGGEVLWIDVLHATLKRGLTPLSWTDYLYLSVGGTLSNAGISGQAFRFGPQISNVLQLDVVTGKGELVSCSRDKNSELFYGVLGGLGQFGVITRARIPLGPAPTRANLQVKWLHLLYNNFSAFSSDQEHLISFGKENETTAADYVEGKLLFNQPPLELSFYPDSDHQRITSLVTQNGIIYIIELVKYYDSNSQAFVAKDVADLVKGLKFVPTFMFEKDASYEEFLNRVYEEELFLRSKGLWEIPHPWLNIWIPRSRISDFNEGVFKNIILKQNISSGISLIYPLNRNKWDDKMSPVTPDEDVFYAVSLLRSTSSIDMLKKYQTQNRQILEFCKGAGIKITEYLTGNKTQQQWMEHFGSKWKLFADRKARFDPKRILSPGQGIF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00403 505 Gene3D - 227 464 IPR016170 -
Vimu10g00403 505 Gene3D - 97 226 IPR016169 -
Vimu10g00403 505 PANTHER GULONOLACTONE OXIDASE 19 505 - -
Vimu10g00403 505 SUPERFAMILY FAD-linked oxidases, C-terminal domain 232 505 IPR016164 GO:0003824|GO:0050660
Vimu10g00403 505 ProSiteProfiles PCMH-type FAD-binding domain profile. 42 224 IPR016166 GO:0071949
Vimu10g00403 505 Pfam FAD binding domain 46 193 IPR006094 GO:0050660
Vimu10g00403 505 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 231 505 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vimu10g00403 505 SUPERFAMILY FAD-binding/transporter-associated domain-like 24 223 IPR036318 GO:0050660
Vimu10g00403 505 ProSitePatterns Ribosome-binding factor A signature. 318 340 IPR020053 GO:0006364
Vimu10g00403 505 Gene3D - 27 505 IPR016167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00403 Vimu-Chr10 3008116 3012171 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00403 K00279 - gmx:100793158 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00403 10 3008116 3012171 Vimu10g00403 10 3008116 3012171 ECH
Vimu7g01432 7 13627703 13631321 Vimu10g00403 10 3008116 3012171 PCT