Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00398 ATGGAGACTCCTCCTCAGCAAGGTGTGGTGAAGAAGAAGGAGACAAGGGGTCGGAAACCTAAGCCAAAGGACGACAAGAAAGATGAGCATTCTAAGACAAAGGAAGGGAGAAAAACCCAGCAATATCAGCAGCAACAACAGCAGCAGCAACAACCTTCCGTCGATGAGAAATACACGCAATGGAAGTCTCTCGTCCCTGTCCTCTATGACTGGCTTGCTAACCACAACCTCGTTTGGCCCTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAAGCCACTTACAAGAATCGTCAGCGGCTCTATCTTTCCGAACAGGCAAACTCTTATTTCATAAATTAA 342 0.4825 METPPQQGVVKKKETRGRKPKPKDDKKDEHSKTKEGRKTQQYQQQQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQANSYFIN 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00398 113 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 56 108 IPR022052 -
Vimu10g00398 113 MobiDBLite consensus disorder prediction 38 56 - -
Vimu10g00398 113 MobiDBLite consensus disorder prediction 7 37 - -
Vimu10g00398 113 PANTHER WD40 REPEAT FAMILY 46 107 - -
Vimu10g00398 113 Gene3D - 13 112 IPR015943 GO:0005515
Vimu10g00398 113 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00398 Vimu-Chr10 2968294 2968719 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00398 K10752 - gmx:100781408 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00398 10 2968294 2968719 Vimu10g00398 10 2968294 2968719 ECH