LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g00391	ATGAAAAATATTGGGTTTCTTGCGGTGGTGGTAGCTACGTTTGTGGTGGCAGCCACCGCCGGTAGCTTCTTCCAAGACTTTGAGTTAACATGGGGTGGTGGTCGTGCCAAAATCCTTGAAAATGGAAACCTTCTTACTCTCTCCCTAGACAAGGCTTCTGGCTCTGGCTTTCGTTCCAAAAACGAGTACTTGTTTGGAAAAATTGACATGCAGCTCAAACTAGTGCCTGGAAACTCAGCTGGCACTGTCACAGCCTATTATCTGTCTTCTCTGGGACCTACTCATGATGAAATAGACTTCGAATTTTTGGGCAACTTGAGTGGTGATCCTTACACTCTTCACACCAACGTATTCAGCCAAGGGAGAGGGAATAGAGAACAACAGTTCCATCTATGGTTTGACCCCACCAAGGACTTCCACACATACTCCGTCCAATGGAATCCTGCAAGCATCATATTTTCTGTGGATGGAACACCAATAAGGGAGTTCAAGAATTTGGAGACAAAGGGTGTTCCATTCCCCAAGAACCAACCTATGAGAATATACTCTAGCTTATGGGATGCTGAGGATTGGGCCACGAGAGGTGGGCTTGTGAAAACGGACTGGAGCCAGGCCCCATTCACGGCCTCATACAGAAACTTCAATGCAGAAGCTTGTGTTTGGTCTTCTTCAGCTTCTTCTTCGTGTTCTTCCTCCTCTGGCCAATCACTGGATGCCACGGGGCAAGCCAAGCTTCGTTTGGTCCAAAAGAACTACATGATTTACAACTACTGCACTGATATCAGACGTTTTCCACAAGGACTCCCTCCAGAATGTTCCTTTGCATGA	828	0.4674	MKNIGFLAVVVATFVVAATAGSFFQDFELTWGGGRAKILENGNLLTLSLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFSQGRGNREQQFHLWFDPTKDFHTYSVQWNPASIIFSVDGTPIREFKNLETKGVPFPKNQPMRIYSSLWDAEDWATRGGLVKTDWSQAPFTASYRNFNAEACVWSSSASSSCSSSSGQSLDATGQAKLRLVQKNYMIYNYCTDIRRFPQGLPPECSFA	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g00391	275	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	97	107	IPR008263	GO:0004553\|GO:0005975
	Vimu10g00391	275	CDD	GH16_XET	21	272	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Vimu10g00391	275	PRINTS	Glycosyl hydrolase family 16 signature	55	73	IPR008264	GO:0004553\|GO:0005975
	Vimu10g00391	275	PRINTS	Glycosyl hydrolase family 16 signature	113	126	IPR008264	GO:0004553\|GO:0005975
	Vimu10g00391	275	PRINTS	Glycosyl hydrolase family 16 signature	131	148	IPR008264	GO:0004553\|GO:0005975
	Vimu10g00391	275	Pfam	Glycosyl hydrolases family 16	25	203	IPR000757	GO:0004553\|GO:0005975
	Vimu10g00391	275	Gene3D	-	8	274	-	-
	Vimu10g00391	275	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	17	272	IPR044791	GO:0004553
	Vimu10g00391	275	FunFam	Xyloglucan endotransglucosylase/hydrolase	9	274	-	-
	Vimu10g00391	275	PIRSF	EndGlu_transf	1	275	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Vimu10g00391	275	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	17	211	IPR000757	GO:0004553\|GO:0005975
	Vimu10g00391	275	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	230	272	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Vimu10g00391	275	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	274	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g00391	Vimu-Chr10	2885897	2887584	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g00391	1	272	Glycoside Hydrolase	AT4G25810	70.423	7.23e-149	416

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g00391	K14504		-	gmx:732603	494.967

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g01418	7	13517213	13518500	Vimu10g00391	10	2885897	2887584	PCT