Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00387 ATGGCTGCATCGTATGCAAGACTTACTGTAGCAGCGTTGGTTCTGATAGCTTTGGCACCAACCTTTCCCCAATCTTCAGTTTCAGCTTCATCTGTGGGTAAATTCGTTGACGAAACCATCAATTCCCACAAGATCGTCATTTTCTCCAAGACCTATTGCCCGTACTGCAAGAGAGCGAAAGCTTTATTCAAAGAGTTGAAACAGGTTCCACATGTTGTTGAGCTTGATGAGAGAGAGGATGGTTCAAAGATTCAGGATGTCTTGATTAATATTGTTGGGAGGCGTACTGTGCCACAAGTTTTCGTTAATGGACAGCACCTTGGAGGCTCAGATGATACAGCTGCATCTTACGAGAGTGGACATCTGCATAAACTTCTAGGAATTAAGTCAGAGGGTCATGATGATCTGTGA 411 0.438 MAASYARLTVAALVLIALAPTFPQSSVSASSVGKFVDETINSHKIVIFSKTYCPYCKRAKALFKELKQVPHVVELDEREDGSKIQDVLINIVGRRTVPQVFVNGQHLGGSDDTAASYESGHLHKLLGIKSEGHDDL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00387 136 PANTHER GLUTAREDOXIN 2 18 127 - -
Vimu10g00387 136 NCBIfam glutaredoxin 45 126 IPR011899 -
Vimu10g00387 136 SUPERFAMILY Thioredoxin-like 34 127 IPR036249 -
Vimu10g00387 136 FunFam Glutaredoxin 2 27 131 - -
Vimu10g00387 136 ProSitePatterns Glutaredoxin active site. 47 62 IPR011767 -
Vimu10g00387 136 Pfam Glutaredoxin 45 106 IPR002109 -
Vimu10g00387 136 ProSiteProfiles Glutaredoxin domain profile. 33 133 - -
Vimu10g00387 136 Gene3D Glutaredoxin 19 127 - -
Vimu10g00387 136 PRINTS Glutaredoxin signature 104 117 IPR014025 -
Vimu10g00387 136 PRINTS Glutaredoxin signature 45 63 IPR014025 -
Vimu10g00387 136 PRINTS Glutaredoxin signature 90 103 IPR014025 -
Vimu10g00387 136 CDD GRX_GRXh_1_2_like 44 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00387 Vimu-Chr10 2850030 2851878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00387 36 115 Miscellaneous Gene Families AT4G15700 35.000 1.18e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00387 K03676 - gmx:100777703 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00387 10 2850030 2851878 Vimu10g00387 10 2850030 2851878 ECH