Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00385 ATGATTCGAGTTGTGACAACCGCAAAGAAGATGATAAAGAAGCATGTTGTGGCTTCATCAGACCTGGTCACCACTGTGATATTGTCACAAATCACCACAGGGAAAGGATTTTGCTTTCGCAAAGAAGAAGGACCTCGAATGATGGCTCAGGCTGTAGTGAGCTTCATAGTGCAAAGTCTTGGTGATTTGCTGATTCAAGAAGCAGTATTCCTATATGGGGTGGAAGACCAAGTGTTGCAGCTGCAAACTGAATTGAGGATGATGCGGTCTTACTTGCAAGATGCAGACAGAAGGCAAGATGAAAACGAAAGCCTAAGGAGTTGGATTTCAGAAATCAGAGAAGCAGCTTATGATTCTGATGATGTCATTGAGTCATATGCCCTCAGAGAGGCCTCAAGAAGAAATTTGCCAGGTGTGTGGAACCTCATAAGAAGGTATGCTTCAATCATTAACCGGTTTATAGAAATCCACATGGTGGGATCTCGTGTTGATAATGTCAAAGCCAGGATTTCTAGCCTCACAAGGAGTCTTAAAACCTATGGCATAAAACCTGAGAAAGAAGAGCCCTCAAATTCTATGCATGCGAGACAGATTTTGAGGAGGTCTTATTCACATGTCATTGAAGAGGACATAATTGGTGTTGACGATGATGTCAAGAAGTTGGAGTCATATTTGGTGGATCCCAGCAAAAGAGTGGTGGCCGTTTGTGGGATGGGAGGACTGGGGAAGACAACATTGGCAAAGAAGGTGTACCATAGTGTTGATGTGAGGAACAGTTTTAAGAGCTGGGCTTGGGCTTACATATCACAGCACTGCCAAGCAAGGGATGTGTGGATTGGAATTTTATTTAGGCTGATCTCTCCTTCACAGGAGCAAAGACAGGAAATTGACAATATGAGAGATGAAGAGCTTGCAAAGATGCTTTACCAAGTTCAAATGGAGAAGAGTTGCTTAGTGGTCCTTGATGATATTTGGAATGCAGAAACATGGAACAAACTGAAGCCTGCCTTCCCTCATGGAACATCAGTATCAGCAGTTGGTAGCAAAATATTGCTAACTTCTCGAAACATTGATGTTGCATTCCAGATGGATCCTAGTTGTTATCTTCACACACCAAAATGTTTGAATGAAGTTGACAGCTGGGAGTTGTTCCAAAAGAAGTCATTTCTAAAAATTGATGATCCAGACTACAGAGAGAAGGAGAAATTGGGAAGGGAAATGGTTGGAAGATGTGGAGGTTTACCATTGGCCATCATTGTTCTTGGAGGACTGTTAGCATCAAAGCCTACATTCTATGAATGGGACACTGTGTGCCAGAACATCAACTCATATTTGAGGAGAGCAAACGGCCAAGAACAACGCTTAGAAGAGGTGTTGGCTTTGAGCTATTACGAATTACCATACCAGTTGAAGCCATGCTTCCTACACTTGGCTCATTTCCCTGAAAATTTAGAGATACCAACAAAGAAACTAATTAGAATATGGGTGGCAGAGGGTATTATATCTTTGGCACACAGTGAAGGAGAAGGTGAAGAAGCTCTTGAGGATGTGGCACAACGTTACCTGACTGAGCTAGTGGAGAGGTGCATGATTCAAGTAGTTGAAAAGAGTTCATCAGGAAGAATTAGAAGTTGCCAAATGCACAACCTCATGAGGGAACTTTGCGTTGACAGGGCATATTTGGAAAACTTTCTTCTGGAGATAAATTCCCGGAATGTAGATGAATATAGAGGGACATCAAGAGCAAGGTCAGTGGGAAAAGTTCGCAGGATTGCCTTGTTTTTGGATCAAGATGTTGATAGGTTCTTCCTTTCACAACTGAAAAGCCACCACCATTTAAGGTCTCTTCTTTGCTTCCATGAAAAGACAGCTAGGCTCAGTGAATGGGGTTTGATGAAGTCATTTTTCGAAAAATGTAGGTTACTCAGAGTCCTGAACTTGGAAGGAATGCAGGGTCTGGGAGGGAAGTTGCCAAAAGAAATTGGCTATTTGATCCACCTAAGGTTTCTCAGTCTGAGAAATACCAAAATTGATGAGTTGCCAACATCAATAGGTAATTTAAAATGCTTGATGACCCTGGATCTTCTAACGGGGAATTCAACTGTGCAAATACCAAATGTCATAGGTAACATGCAAAAAATGAGACATTTATATCTACCAGAGTCTTGTGGTAATGGCATTGAAAGGTGGAAACTGGACAACCTGAAAAACTTGCAGACGCTGATTAACTTCCCTGCAGAAAAGTGTCATGTAAGAGATCTCATGAAATTAACCAATTTGAGAAAATTAGTGATTGATGATCCTAACTTTGGAGGTATCTTTAGGTATCCTGATGTGCAATTTAGGCACCTAGAGTCATTGTTTTTTGTTAGTTATGAAGATATATCAGTTGTCCAAGTTGCATTAGGATGTCCCAATCTTTACAAACTTCACATAGAAGGACCTATAAAGAATTTTCCTGAACCCCACCAACTTTCTTCCAAGCTTCTGAAGCTAAAGTTAACGGGTTCTGGACTTCTTGTAGATCCGATGCCAACATTAGAGAAGCTTCCAAATTTAAGGTTGCTTGAGCTACAACTTGATTCATTCGTAGGCAAGCAACTGCATTGTTCCAGCAAAGGCTTTGCTCAACTCAAGTCTCTGGTTATCCACGATTTGTTCAATCTTGAGGAGTGGAGGTTGGATAAAGGAGCCATGCCTTGTCTTAGAGAACTTAAGATTGAAAATTGCACCAAGCTTGAGAAGGTTCCAGATGGGCTCAGATTTCTTACCACTCTTCAGCATCTGGAGATCAGATCAATGTTTGCAGCATTCAGAACTAAACTTGAAAAAGGAGGAGAGGATCACTACAAAATCCAACATGTGTCAGCTGTGGTTTTTTGTTACTGTGACTATTAG 2898 0.4137 MIRVVTTAKKMIKKHVVASSDLVTTVILSQITTGKGFCFRKEEGPRMMAQAVVSFIVQSLGDLLIQEAVFLYGVEDQVLQLQTELRMMRSYLQDADRRQDENESLRSWISEIREAAYDSDDVIESYALREASRRNLPGVWNLIRRYASIINRFIEIHMVGSRVDNVKARISSLTRSLKTYGIKPEKEEPSNSMHARQILRRSYSHVIEEDIIGVDDDVKKLESYLVDPSKRVVAVCGMGGLGKTTLAKKVYHSVDVRNSFKSWAWAYISQHCQARDVWIGILFRLISPSQEQRQEIDNMRDEELAKMLYQVQMEKSCLVVLDDIWNAETWNKLKPAFPHGTSVSAVGSKILLTSRNIDVAFQMDPSCYLHTPKCLNEVDSWELFQKKSFLKIDDPDYREKEKLGREMVGRCGGLPLAIIVLGGLLASKPTFYEWDTVCQNINSYLRRANGQEQRLEEVLALSYYELPYQLKPCFLHLAHFPENLEIPTKKLIRIWVAEGIISLAHSEGEGEEALEDVAQRYLTELVERCMIQVVEKSSSGRIRSCQMHNLMRELCVDRAYLENFLLEINSRNVDEYRGTSRARSVGKVRRIALFLDQDVDRFFLSQLKSHHHLRSLLCFHEKTARLSEWGLMKSFFEKCRLLRVLNLEGMQGLGGKLPKEIGYLIHLRFLSLRNTKIDELPTSIGNLKCLMTLDLLTGNSTVQIPNVIGNMQKMRHLYLPESCGNGIERWKLDNLKNLQTLINFPAEKCHVRDLMKLTNLRKLVIDDPNFGGIFRYPDVQFRHLESLFFVSYEDISVVQVALGCPNLYKLHIEGPIKNFPEPHQLSSKLLKLKLTGSGLLVDPMPTLEKLPNLRLLELQLDSFVGKQLHCSSKGFAQLKSLVIHDLFNLEEWRLDKGAMPCLRELKIENCTKLEKVPDGLRFLTTLQHLEIRSMFAAFRTKLEKGGEDHYKIQHVSAVVFCYCDY 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00385 965 FunFam Probable disease resistance protein At5g66910 374 462 - -
Vimu10g00385 965 Gene3D - 374 467 IPR042197 -
Vimu10g00385 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 477 IPR027417 -
Vimu10g00385 965 Gene3D Ribonuclease Inhibitor 579 951 IPR032675 -
Vimu10g00385 965 PRINTS Disease resistance protein signature 232 247 - -
Vimu10g00385 965 PRINTS Disease resistance protein signature 411 425 - -
Vimu10g00385 965 PRINTS Disease resistance protein signature 848 864 - -
Vimu10g00385 965 PRINTS Disease resistance protein signature 311 325 - -
Vimu10g00385 965 CDD RX-CC_like 49 175 IPR038005 -
Vimu10g00385 965 Gene3D - 52 159 - -
Vimu10g00385 965 PANTHER DISEASE RESISTANCE PROTEIN RP 80 912 IPR044974 GO:0006952
Vimu10g00385 965 Gene3D - 469 557 IPR036388 -
Vimu10g00385 965 Pfam NB-ARC domain 216 463 IPR002182 GO:0043531
Vimu10g00385 965 Gene3D - 190 368 IPR027417 -
Vimu10g00385 965 FunFam Probable disease resistance protein At1g61300 193 366 - -
Vimu10g00385 965 Pfam Rx N-terminal domain 52 134 IPR041118 -
Vimu10g00385 965 SUPERFAMILY L domain-like 590 933 - -
Vimu10g00385 965 FunFam Probable disease resistance protein At1g63360 463 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00385 Vimu-Chr10 2835413 2840479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00385 653 863 Receptor kinase-like Gene Family AT3G47090 26.222 4.05e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00385 - - gmx:100305356 1463.74