Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00347 ATGTTGTTCCACCCACGACCCTTGTCCCTCCAAACCTTGCTCAAGCGTGGCTTCACCCCCACTCCCAAACCCATCAACCGCTTCCTCCTTTTCCTCTTCCACCTCCAAAAGTTCAACCTAATAACCCACTTCTTCTCTCAGCTGCAAACCAACAACGCCCCCACCAACCCCCGAACCCTCTCCCTCCTCACATGGGCACTCCTCAAATCCCACAAATTCGAACAGGCAGAACAATTCATGCACACTCACTTGAAAATCACTCACCCCTTCATGTGGGACACCCTCATCCAAGGCCTCTGTGCCCAACGCCACGACCCTGAGAAAGCTCTCTCCGTTTTGCGGCGTTGTGTGAGGGACCGTGCTGTAGTTCCTTCTTCTTTCACCTTTTGTTTTATAGTTCATGAATTGAGCTCAAAGGGGCTGATGGGTATGGCCGTTGAGGTGCTGGAGTTGATGGCTGAGGATGGAGTTAGGTACCCTTTTGATGATTTTGTGTGTAGTTCCGTGATTTCTGGGTTTTGTAGGGTTGGAAAACCGGAACTTGGGGTGGATTTTTTTAAGAGAGTCACTGATTGTGGCGGGTTTAGGCCCAATGTGGTGACGTGCACGGCTCTTGTGGTGGCTCTTTGTAAGATGGGGAGGGTTGGAGAAGTATGTGGTTTGGTGCAGTGGATGGAGAAGGAAGGGTTGGCATTGGATGTTGTTTTGTATAGTGCTTGGGCTTGTGGATATGTTGAGGAGAGGGTTTTGGTTGAGGTTTTAAGGAGGATGAGGGAAATGGAGGAGAAGGGTATAGGCCATGATTGTGTGAGTTATACTGTGCTTGTAGATGGGTTCTCCAAGCTAGGTGATGTGGAGAAGTCGTTTACTTTCTTGGCCAAGATGATAAAAGAAGGACACAGACCTAATAAAGTCACATACAGTGCAATCATGTCTGCTTATTGTAAGAAGGGTAAGGTGGAGGAAGCGTTCGTTGTTTTCGAAAGCATGAAAGAATTAGGAATTGAAATGGATGAATATGTGTTTGTGATTTTGATTGATGGGTTTGGAAAGAGAGGGGATTTCAATAAGGTGTTTAGTCTGTTTGATGAAATGGAGAGGAGCGAGATCAGCCCTAGTGTTGTTACATACAATGCCGTTATGAATGGTTTATCCAAGCATGGGAGGACAGTCGAGGCGGATGAGTTATCGAAAAATGTTGCTGCAGATGTGATTACATACAGCACACTTTTGCATGGGTATACTGAAGAAGAGAACATTCCCGGGATTTTGCAGACAAAGAAGCGAATAGAAGAATCTGGGATAGCTATGGATGTTGTGATGTGTAATGTACTTATCAAAGCACTGTTTATGATGGGGGCTTTTGAAGATGTTCATGCACTTTACAGAGGAATGTCTGAAATGGATCTGGTTCCAAATTCAGTGACTTACTGCACAATGATTGATAGTTATTGCAAGGTAGGTAGAATTGACGAGGCACTTGAGGTATTTGATGAATTTAGAAAGACTTCAATCTTGTCACAGGCGTGCTACAATAGTATTATTAATGGCCTTTGCAAGAATGGTATGGCAGAAATGGCCATTGACGCATTACTTGAACTCCATAACTCAGGTCTCGAGTTGAATATAGGTACATTTAGGATGTTAATGAATACAATATTTGAAGAAAACAATACAAAAGAGGCTTTAGATTTTGTTTACAGAATGGATGGTTTGGGACCAGACATATATAGTGCAGTATGTAATTATTCTATCCTTTTATTATGTCAAAGAGGATTACTTGATGATGCAAATCATATGTGCATGATGCTGAAAAAGAGAGGTCAACCTGTCACGGGCAAGTCTTATTACTCAATTTTGAGAGGGTATCTTAGTAATGGGAATAGGGAGAAAATTCTGCCCCTTTTGAATAGCTTCCTGAAAGAATATGGTCTAGTTGAACCAACGGTACAAAGTATACTTGCATGTTACCTCTGTCTGAAAGATGTCAACCGTGCCCTTCAGTATCTTGGAAAAATGGTGGATAACTCTTTTGCCGACATTTTCCCTGCCTCTATTCTTAAGATTCTCATAAAGGAAGGTAGATCTATAGATGCATATAAGCTTGTCACAGAGACTCAAGATAATTTACCAGTCACATATTTTGATTATGCAATTGTTATTGATGGCTTGTGCAAGGGTGGATATCTCAATAAAGCATTGGATCTCTGTTCCTTTGTTGAAAGGAAGGGGATGAATTTGAACATAGTCATATATAATTCAATCATAAATGGATTGTGCCATGAGGGATGTCTTATTGAAGCATTTCGGCTGTTAGATTCGTTAGAGAAACTTAATTTAGTACCCTCTGAAATAACTTACGCTACAGTAGTTTATGCTCTATGTAGAGAGGGGTTTTTGCTAGATGCAGAGCATATTTTCAGGAAAATGGTCCTCAAGGGCTTTCAGCCTAAAGTACAAGTTTACAACTCATTACTTGATGGATTTTCTAAGCTTGGACAATTAGAAAAGGCATTTGAGCTTCTTATTGATATGGAGACAAAACATATCGAGCCTGACAGTTTGACTATTAGTGCTGCAATTAATTGCTATTGCCAAAAGGGTGACATGCAAGGAGCCCTTGAATTCTATTATAAGTTCAAGATGAAATCTGTATCACCTGATTTTTTTGGCTTCTTATATTTGATAAGAGGTCTTTGTTCCAAGGGAAGGATGGAAGAAGCCAGGAGTGTCTTGAGAGAAATGCTCCAATCCAAGCATGTGGCAGAATTGATAAACATAGTCAACAAGGAGGTTGATAGTGAGTCAATAAGTGATTTCCTTACCACTTTGTGTGAGCAAGGAAGGGTTCAAGAAGCTGTTACAGTTCTCAATGAAATTGCCTGTAATCTTTTTCCCGTTCAAAAGTTGTCCACTTATAAACGACAAAAGATTTATGAATGGAAGGATTTTGGTTCTAAATGCTCAAGCATTCTACCTTCCTCTTGCAAAAGTGGTTGGAATCTTGGATCTTGTGATGGCAAAGATGTAAATAATCTTGAAACAAATAACAGTGATTGTATGACAAGATCCCAGATGCAGGGTTTTGACTTCTATTATTCTAGAATAGCTGCTCTTTGTACCAAAGGGGAACTTCAGAAAGCAAATCAATCAGCGAAAGAAATGCTTTCTGATCTGACAGAGTCCATGAACTGA 3195 0.4097 MLFHPRPLSLQTLLKRGFTPTPKPINRFLLFLFHLQKFNLITHFFSQLQTNNAPTNPRTLSLLTWALLKSHKFEQAEQFMHTHLKITHPFMWDTLIQGLCAQRHDPEKALSVLRRCVRDRAVVPSSFTFCFIVHELSSKGLMGMAVEVLELMAEDGVRYPFDDFVCSSVISGFCRVGKPELGVDFFKRVTDCGGFRPNVVTCTALVVALCKMGRVGEVCGLVQWMEKEGLALDVVLYSAWACGYVEERVLVEVLRRMREMEEKGIGHDCVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKVEEAFVVFESMKELGIEMDEYVFVILIDGFGKRGDFNKVFSLFDEMERSEISPSVVTYNAVMNGLSKHGRTVEADELSKNVAADVITYSTLLHGYTEEENIPGILQTKKRIEESGIAMDVVMCNVLIKALFMMGAFEDVHALYRGMSEMDLVPNSVTYCTMIDSYCKVGRIDEALEVFDEFRKTSILSQACYNSIINGLCKNGMAEMAIDALLELHNSGLELNIGTFRMLMNTIFEENNTKEALDFVYRMDGLGPDIYSAVCNYSILLLCQRGLLDDANHMCMMLKKRGQPVTGKSYYSILRGYLSNGNREKILPLLNSFLKEYGLVEPTVQSILACYLCLKDVNRALQYLGKMVDNSFADIFPASILKILIKEGRSIDAYKLVTETQDNLPVTYFDYAIVIDGLCKGGYLNKALDLCSFVERKGMNLNIVIYNSIINGLCHEGCLIEAFRLLDSLEKLNLVPSEITYATVVYALCREGFLLDAEHIFRKMVLKGFQPKVQVYNSLLDGFSKLGQLEKAFELLIDMETKHIEPDSLTISAAINCYCQKGDMQGALEFYYKFKMKSVSPDFFGFLYLIRGLCSKGRMEEARSVLREMLQSKHVAELINIVNKEVDSESISDFLTTLCEQGRVQEAVTVLNEIACNLFPVQKLSTYKRQKIYEWKDFGSKCSSILPSSCKSGWNLGSCDGKDVNNLETNNSDCMTRSQMQGFDFYYSRIAALCTKGELQKANQSAKEMLSDLTESMN 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00347 1064 Gene3D Tetratricopeptide repeat domain 533 683 IPR011990 GO:0005515
Vimu10g00347 1064 Gene3D Tetratricopeptide repeat domain 798 989 IPR011990 GO:0005515
Vimu10g00347 1064 Coils Coil 1042 1062 - -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 853 887 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat family 302 350 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat family 748 796 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat family 817 866 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 197 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 748 782 IPR002885 -
Vimu10g00347 1064 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 582 777 - -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 895 921 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 510 542 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 856 888 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 341 373 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 305 339 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 475 504 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 440 473 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 785 817 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 821 854 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 165 199 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 750 783 IPR002885 -
Vimu10g00347 1064 NCBIfam pentatricopeptide repeat 375 396 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 888 922 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat 884 915 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat 469 499 IPR002885 -
Vimu10g00347 1064 Pfam Pentatricopeptide repeat domain 398 448 IPR002885 -
Vimu10g00347 1064 Gene3D Tetratricopeptide repeat domain 684 797 IPR011990 GO:0005515
Vimu10g00347 1064 Gene3D Tetratricopeptide repeat domain 319 423 IPR011990 GO:0005515
Vimu10g00347 1064 Gene3D Tetratricopeptide repeat domain 66 212 IPR011990 GO:0005515
Vimu10g00347 1064 Gene3D Tetratricopeptide repeat domain 213 318 IPR011990 GO:0005515
Vimu10g00347 1064 Gene3D Tetratricopeptide repeat domain 424 507 IPR011990 GO:0005515
Vimu10g00347 1064 Pfam PPR repeat 717 744 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat 165 193 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat 510 538 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat 375 396 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat 270 299 IPR002885 -
Vimu10g00347 1064 Pfam PPR repeat 200 229 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 783 817 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 818 852 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vimu10g00347 1064 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00347 Vimu-Chr10 2426797 2429991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00347 751 960 Glycosyltransferase AT1G05670 22.275 1.45e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00347 - K17964 gmx:100783405 1785.77