Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00340 ATGGGATGTTCACATTCAAGGTTGGATGATGAAGAGGCAGTTCAGCTTTGTAGAGACAGAAAGAAGTTCATCAAACAAGCTGTTGAGCAAAGGACTCGGTTGGCCACTGGACACATAGCATACATAGAATCTCTGAAAAGAGTTTCAGCAGCACTTCGTGATTACATTGAAGGTGATGAACCTCGCGAGTTCTCATTGGACAATGCCATCACCCCACCTTTCACACCTGTGAAGAAGAAAAGTGGCCCGGGATTCATTCCTATATCAGCAAAACCCTTCGCAGCAACAGGAGCTATTGAGTTTGGGATCGGACCAAACTCTACTTTGAAAGTGAATTACTTTAGACCTGGTGGCAACCCAGCAATTTCAGTTGAGGAAAGGCCTCAATCTCCGGAAAGGGTACGTGTTGAGACATATTATCCTCCAATGCAGCAGTATGGCTTTGATGGATTTTTCAACATGCAATCCTCACCGGTGAATCCCTCAATTTTTGCCTATTCTCCCAATAATAGGCCTACTATCCCTCCCCCTTCACCTCAAGCTTCCCAATGGGATTTCTTTTGGAACCCCTTTTCTTCTTTGGACAGCTATGGCTATCCTGCAAAAAGTATTGATCATGCTGCAATGGATGATGAATACAGAGGACTCAGGCAGGTTAGAGAAGAAGAAGGAATACCAGACCTGGAAGAAGATGAAACTGAACATGAAGACGGTGTTGGAAAAAGAAATGTAGAAGAAAGAACTAGACCCAACATGAATTCTTCAAAAGAAGAAGTTATTGTTGAAGATGTTGAAGATGATGATGATGATGAGGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAAGAGGAGGAAGAAACAGACATTGAAGATGCAACTGAGCATGTTGCCAAAGATTCCCAAGCTCATGGAAGTGCAAGTTTTGAAGTATCAAAAGCTCAAGCTGCTGGTCATATTGAATCTAGCCATAGAGAAATGACAATTGGTAAGAAAGATGCTGTGGAAGAAACACCTGGTTTTACTGTTTATGTAAACCGAAGGCCAACAAGCATGGCAGAAGTGATCAATGATATTGAAACTCAATTCACAATCGTATACAATGCAGCTAAAGATGTTGCAGCATTGTTAGAGGCCAAGAAATCTCAATATTTGTTGACTTCTAATGAACTTTCAGGATCAAAGTTGTTGAACCCGGTAGCTCTTATTCGATCAGCTTCTTCACGCTCTTCTTCATCACGATATTTGGTAAATAGTTCAAGCACTGGCAAGGAAGGTTGTGATGGCACAAAGGATCTCTCTGAGGAACATTGTATGTTATCAGGTAGTCACCACTCCACATTGGACAGATTAAATACCTGGGAGAAGAAACTCTATGAGGAAGTCAGGTCTGGAGAGCGTATCCGAATTGCATATGAGAAGAAATGCAAACAACTCAGGAACTTTGATGCAAAAGGAGAGGACCCCTCTTGCGTAGATAAAGCAAGAGCAGCCATTAGAGATCTTGATACCCAGATAACAGTTTCAATACACTCAGTTGAAGCTATTTCAAGGCGAATCGAAACTCTAAGGGATGAAGAGTTATATCCCCAACTTCTTGAATTGGTGCAAGGGCTGGAAAGGATGTGGAAAGTGATGGCAGAATGCCATCAGAAACAGAAGAGAACCTTGGATGAAGCTAAGATTCTTCTAGCTGGCACTTATTCTAAACTACATGCTAGAAAACAGTCTTCCATGTTAATGACAGATCCAAACAGGCTAGCTCGTTCAGCCTCCAATCTTGAATTTGAGTTAAGGAACTGGAGAAACGCCTTTGAGTCATGGATAACTTCTCAGAGATCCTACATTCATGCACTAACTGGATGGCTTCTTCGGTGCATGAGAACTGAGCCTGATGCATCCAAGTTGCCATGCTCTCCTCGTAGGTCAAGTGGCACTCACCCTTTGTTTGGACTGTGTGTTCAGTGGTCAAGACGGCTAGATGCCATACAAGAAAAGGCAGTGCTTGATGGCTTAGACTTTTTTGCAGCTGGGATGGGGTCCCTCTATGCACATCAGTTGAGAGAAGATTGTAGGAGAAACTCATTTGGATCAAAACAAAGTAATGGTAATATGGAACTAGTGGAAGCTGGTGAGGTAGAAGAGGTAATGGCTCCAGAGAAACTTGCTGAAGTTGCTATTAAGGTGCTTTGTGCTGGAATGTCTGTTGCTATTAGCTCACTGGCAGAGTTTGCTTTGGATTCTGCTGAGGGATACAATGAAGTTGTCAAGCAATGGGACAATGTCAAGTGTCAAAATACTGCTTCTAGCAACACCAGGACATAG 2337 0.43 MGCSHSRLDDEEAVQLCRDRKKFIKQAVEQRTRLATGHIAYIESLKRVSAALRDYIEGDEPREFSLDNAITPPFTPVKKKSGPGFIPISAKPFAATGAIEFGIGPNSTLKVNYFRPGGNPAISVEERPQSPERVRVETYYPPMQQYGFDGFFNMQSSPVNPSIFAYSPNNRPTIPPPSPQASQWDFFWNPFSSLDSYGYPAKSIDHAAMDDEYRGLRQVREEEGIPDLEEDETEHEDGVGKRNVEERTRPNMNSSKEEVIVEDVEDDDDDEDDEEEEEEEEEDEEEEEEEETDIEDATEHVAKDSQAHGSASFEVSKAQAAGHIESSHREMTIGKKDAVEETPGFTVYVNRRPTSMAEVINDIETQFTIVYNAAKDVAALLEAKKSQYLLTSNELSGSKLLNPVALIRSASSRSSSSRYLVNSSSTGKEGCDGTKDLSEEHCMLSGSHHSTLDRLNTWEKKLYEEVRSGERIRIAYEKKCKQLRNFDAKGEDPSCVDKARAAIRDLDTQITVSIHSVEAISRRIETLRDEELYPQLLELVQGLERMWKVMAECHQKQKRTLDEAKILLAGTYSKLHARKQSSMLMTDPNRLARSASNLEFELRNWRNAFESWITSQRSYIHALTGWLLRCMRTEPDASKLPCSPRRSSGTHPLFGLCVQWSRRLDAIQEKAVLDGLDFFAAGMGSLYAHQLREDCRRNSFGSKQSNGNMELVEAGEVEEVMAPEKLAEVAIKVLCAGMSVAISSLAEFALDSAEGYNEVVKQWDNVKCQNTASSNTRT 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00340 778 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Vimu10g00340 778 Coils Coil 261 300 - -
Vimu10g00340 778 MobiDBLite consensus disorder prediction 235 259 - -
Vimu10g00340 778 PANTHER UNCHARACTERIZED 1 762 - -
Vimu10g00340 778 MobiDBLite consensus disorder prediction 222 334 - -
Vimu10g00340 778 Pfam Protein of unknown function (DUF632) 356 683 IPR006867 -
Vimu10g00340 778 MobiDBLite consensus disorder prediction 260 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00340 Vimu-Chr10 2352988 2356815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00340 1 719 Acyl Lipid Metabolism Gene Families AT2G27090 28.458 5.33e-67 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00340 - - gmx:100780704 1296.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00340 10 2352988 2356815 Vimu10g00340 10 2352988 2356815 ECH
Vimu7g01365 7 13002564 13010752 Vimu10g00340 10 2352988 2356815 PCT