Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00323 ATGGAAGTTTCTTCGGAGCCGCCGTCTAACGGCGCCGGCGAAACCATAAGCAAAAATGCATTGAAACGAGAACTTAAGAACAAACAGAGAGAAGAAGAAAGGAAGCGCAAGGAGGAAGAGAAAGCCAAAAAGGCAGCTGAAATGCAGCGGGCTAAGGATAACAAATCTGCACCTGTTGATGAGGATGATATGGACCCGACTCAATACCTTGAGAATAGGCTGAGGTATCTTGCAATTCAAAAGGCAGAAGGCAGAAATCCATATCCCCACAAATTCTTTGTCACTATGTCTCTTGATGAATACATCAAGGAATATGGAGGTTTAAGTGAAGGGCAGCACCTTGAGGATGTTTCTGTGTCTTTGTCTGGTCGGATCATGCACAAGCGCACCTCTGGTTCTAAGCTTGTCTTTTATGACCTGCATGGTGGTGGTTTCAAGGTCCAGGTTATGGCCGATGCGAGTAAATCAGACTTGAATGAGGCTGGCTTTTCCAAATTTCATTCTAATGTGAAGCGTGGTGACATAGTTGGTATCACTGGATTTCCTGGAAAAAGTAAGAAGGGTGAACTTAGTATTTTTCCAAAGACTTTTGTAGTGCTGTCTCATTGTTTGCATATGATGCCCAGGCAAAAGTCTGCTGCTGCTGCTGATAATAGAAATCCATGGGTACCAGGAAGTACCAGGAATCCTGAAATATATATTTTGAAAGATCAGGAAACTAGATATCGTTTACGCCATTTAGATTTGATGCTTAATCCAGAGGTCCGAGAAATCTTTAAGACCAGATCTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTCGAAACACCTATGATGAACATGATTGCTGGTGGAGCTGCAGCACGCCCATTTGTAACCCATCACAATGACCTTAACATGAGGCTGTTCATGAGGATTGCTCCAGAACTGTATCTTAAGGAGTTGGTTGTTGGTGGGTTGGACCGTGTTTATGAAATTGGCAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACTTGTGAATTCTATATGGCTTATAAGGACTACAATGACTTAATGGATATAACAGAACAAATGTTGAGTGGTATGGTCAAGGAACTTACAAAGGGAAGCTATAAAATTAAGTATCATGCTGATGGGATTGACAAGGAACCTATTGAAATTGATTTTACTCCACCTTTCAGAAGAATTGACATGATTGAAGAATTAGAGAAGATGGCAGGCCTCAGTATTCCCAAAGACTTGTCGAGTGAGGAGGCTAATCAATATTTGAAGGACATATGCTTGAAGTGTGAGATCAAATGTCCACCTCCTGAGACAACTGCACGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAAACGTGTGTAAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCTTTAGCAAAGTGGCACAGATCAAAGCCAGGCCTGACCGAACGTTTTGAATTATTTATTAATAAACATGAACTTTGCAATGCGTACACTGAACTGAATGACCCTGTAGTACAACGACAGAGATTTTCCGAACAACTCAAGGATCGGCAATCGGGTGATGATGAAGCAATGGCCTTGGATGAAACATTTTGTACGGCTCTGGAGTATGGTTTACCACCTACTGCTGGTTGGGGCTTGGGTATTGATCGATTGACCATGTTATTGACAGATGCACAGAATATCAAGGTTCTGGTTCTTGCTCTTCCTCCATGCTTGCTTTAG 1773 0.4157 MEVSSEPPSNGAGETISKNALKRELKNKQREEERKRKEEEKAKKAAEMQRAKDNKSAPVDEDDMDPTQYLENRLRYLAIQKAEGRNPYPHKFFVTMSLDEYIKEYGGLSEGQHLEDVSVSLSGRIMHKRTSGSKLVFYDLHGGGFKVQVMADASKSDLNEAGFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAAAADNRNPWVPGSTRNPEIYILKDQETRYRLRHLDLMLNPEVREIFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDITEQMLSGMVKELTKGSYKIKYHADGIDKEPIEIDFTPPFRRIDMIEELEKMAGLSIPKDLSSEEANQYLKDICLKCEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFINKHELCNAYTELNDPVVQRQRFSEQLKDRQSGDDEAMALDETFCTALEYGLPPTAGWGLGIDRLTMLLTDAQNIKVLVLALPPCLL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00323 590 PRINTS Lysyl-tRNA synthetase signature 319 332 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vimu10g00323 590 PRINTS Lysyl-tRNA synthetase signature 337 354 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vimu10g00323 590 PRINTS Lysyl-tRNA synthetase signature 274 284 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vimu10g00323 590 PRINTS Lysyl-tRNA synthetase signature 472 488 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vimu10g00323 590 PRINTS Lysyl-tRNA synthetase signature 290 306 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vimu10g00323 590 CDD LysRS_core 252 579 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Vimu10g00323 590 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 259 587 IPR006195 -
Vimu10g00323 590 Hamap Lysine--tRNA ligase [lysS]. 72 590 IPR002313 GO:0004824|GO:0005524|GO:0006430
Vimu10g00323 590 Gene3D Bira Bifunctional Protein; Domain 2 233 586 IPR045864 -
Vimu10g00323 590 FunFam Lysine--tRNA ligase 66 209 - -
Vimu10g00323 590 Coils Coil 18 54 - -
Vimu10g00323 590 Pfam tRNA synthetases class II (D, K and N) 237 581 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu10g00323 590 NCBIfam lysine--tRNA ligase 230 582 IPR002313 GO:0004824|GO:0005524|GO:0006430
Vimu10g00323 590 MobiDBLite consensus disorder prediction 19 65 - -
Vimu10g00323 590 Gene3D - 60 208 IPR012340 -
Vimu10g00323 590 MobiDBLite consensus disorder prediction 1 65 - -
Vimu10g00323 590 Pfam OB-fold nucleic acid binding domain 119 196 IPR004365 GO:0003676
Vimu10g00323 590 SUPERFAMILY Nucleic acid-binding proteins 64 208 IPR012340 -
Vimu10g00323 590 MobiDBLite consensus disorder prediction 1 16 - -
Vimu10g00323 590 SUPERFAMILY Class II aaRS and biotin synthetases 237 579 IPR045864 -
Vimu10g00323 590 Coils Coil 590 590 - -
Vimu10g00323 590 CDD LysRS_N 118 249 IPR044136 GO:0000166
Vimu10g00323 590 FunFam Lysine--tRNA ligase 233 587 - -
Vimu10g00323 590 PIRSF LysRS2 4 588 IPR034762 GO:0004824|GO:0005524|GO:0006430
Vimu10g00323 590 PANTHER LYSYL-TRNA SYNTHETASE 14 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00323 Vimu-Chr10 2177902 2185236 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00323 K04567 - gmx:100785660 1072