Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00272 ATGGCCTCAAACTCCATGGCTGGCTTCATCACCGGCTCTCATGCTCATTCTTCACGTGATTCCAATGAGCATCAGGTCCCTACCCGTCAACCTTCATCCAAAACATGTCGTGTCTGTGGTGATGAGATTGGATATAAAGAAAATGGAGAACTGTTTGTGGCTTGTCATGTGTGTGGATTTCCTGTGTGTCGACCATGTTATGAGTATGAGAGGAGTGAAGGAAACCAGAGCTGTCCTCAATGCAACACTCGCTATAAGCGCCACAAAGGTTGTCCTAGAGTGGCTGGAGATGAAGAAGATAACTTCGATGCTGATGATTTTGATGATGAGTTTCCAATTAAGAATCACCGAGAAGATCTAGATCGGGAACACGATGTTAACCATGTGGGAAACGGGGACTATAATCAAGAGAAATTGCATCCGAATGGTCAAGTTTTCTCTTCAGCTGGGAGTGTTACTGGCAAGGATTTTGATGGGGACAAAGATTTCTACAGCAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAGAAAAAAGAGGTCTTCTAAACAAAGAAGACGGAAAAGAAGACCAAGGTGAAGATGATGATTACATTTTGGCTGAAGCTAGACAACCATTGTGGCGCAAGGTTCCAATATCTTCAAGCTTAATCAATCCATACCGCATAGTGATTGTGACGAGGCTGGTCATCCTTGCTTTCTTCTTTAGATTCCGAATCTTAACTCCAGCAAATGATGCATATGCCTTGTGGCTAATCTCTGTTATATGTGAGATATGGTTTGCACTGTCATGGATTCTTGATCAGTTCCCCAAGTGGTTCCCCATCACTCGAGAGACTTACTTGGATCGCTTGGCCTTAAGGTTTGAGCGTGAAGGGGAACCTAATCAACTAGCTCCAGTTGATTTCTTTGTGAGTACTGTGGACCCTCTGAAGGAACCTCCCATTATAACAGCCAACACTGTCCTTTCAATCCTCTCTGTTGACTACCCTGTTGACAAGGTCAGCTGCTATGTCTCAGATGATGGTGCATCCATGCTTCTGTTTGATTCCTTGGCAGAAACTGCTGAGTTTGCAAGAAGATGGGTTCCCTTTTGCAAGAAGTATAACATAGAGCCAAGGGCTCCCGAGTTTTACTTTTCTCAGAAAATTGATTACTTAAAAGATAAGGTGCAACCTACGTTTGTGAAGGAAAGAAGGTCCATGAAGAGGGAATATGAAGAGTTTAAGGTGAAAATTAATTCTTTGGTGGCAAAGGCTCAAAAGAAACCTGAGGAAGGGTGGGTGATGCAGGATGGAACTCCATGGCCAGGGAACAACACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGGTGCACTAGATGTTGAAGGCAAGGAATTGCCACGACTTGTGTATATTTCACGTGAAAAACGACCTGGATATCCACACCACAAGAAGGCTGGTGCCATGAATGCTTTGGTTCGAGTCTCTGCTGTGCTTACGAATGCACCATTCATGTTGAATTTGGATTGTGATCACTACGTCAATAATAGCAAGGCAGTAAGAGAGGCTATGTGCTTTTTAATGGACCCCAACCTTGGGAAGAAGTTGTGCTATGTTCAATTTCCACAAAGATTTGATGGTATTGATCGCCATGATAGATATGCTAATCGCAACACTGTGTTCTTTGATATCAACATGAAAGGGCTTGACGGGATTCAAGGTCCAGTATATGTTGGTACCGGAACTGTGTTCAACAGGCAGGCATTGTATGGTTACGATCCACCGGTGTCGGAGAAAAGACCAAAGATGCATTGTGACTGTTGGCCATCATGGTGTTGCTTTTGTTGTGGTGGTTCAAGAAAGTCCAAGTCAAAAAAGAAATCAGGAAAAGGTCTCTTCAGTGTGTTCTCCAAGAACAAAAACAAAAAGAAAATGATGGGGAAAGACTATGTTAGAAAAGGGTCAGGGTCCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGGTATGAGGACTTGGAGAAATCATCCCTCATGTCTCAGAAAAGTTTTGAGAAACGATTCGGGCAATCACCAGTCTTCATTGCTTCCACCTTGATGGAAAATGGAGGACTTCCAGAAGGCACAAATAGCCAATCATTGGTCAAGGAGGCCATTCATGTTATAAGCTGTGGTTATGAAGAGAAGACTGAATGGGGAAAAGAGATTGGTTGGATTTATGGGTCAGTCACAGAAGATATTTTGACTGGATTCAAGATGCACTGTAGAGGATGGAAATCAGTATATTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCCCCAATAAATCTATCAGATAGGTTGCACCAAGTTCTGAGGTGGGCTCTTGGTTCTGTTGAGATTTTCCTTAGTCGCCACTGCCCCTTGTGGTATGGTTATGGAGGAAAACTCAAGTACCTAGAGAGGCTAGCTTACACTAATACCATTGTTTATCCATTCACCTCCATTCCTCTGATTGCCTACTGCACAATTCCTGCTGTGTGTCTCTTGACTGGAAAGTTCATCATTCCCACACTGACAAACCTTGCTAGCGTTTGGTTTATGGCTCTTTTTATCTCCATCATTTTAACAAGTGTGCTTGAGCTCCGATGGAGTGGCGTTACAATTGAAGCCCTGTGGAGAAATGAGCAATTTTGGGTGATTGGAGGCGTTTCTGCTCACCTTTTTGCTGTGTTTCAAGGTCTGCTCAAAGTTCTTGCTGGAGTAGACACGAATTTCACAGTGACAGCAAAAGCAGCAGAAGACACTGAGTTTGGAGAGCTGTATCTCTTTAAGTGGACCACTCTTCTGATCCCTCCAACCACTCTGATAATCTTGAACATTGTTGGTGTTGTGGCTGGAGTGTCTGATGCCATAAACAATGGGTATGGTTCATGGGGACCTCTGTTTGGGAAGTTGTTCTTTGCCTTTTGGGTCATTGTTCACTTGTACCCTTTCCTCAAAGGTCTAATGGGAAAGCAAAACAGGACTCCTACCATTGTGGTGTTGTGGTCAATCCTTCTAGCATCTATTTTCTCATTGATTTGGGTCAGGATTGATCCCTTCTTGCCCAAGCAAACAGGTCCTGTGCTTAAACAATGTGGGGTGGAATGCTGA 3147 0.4357 MASNSMAGFITGSHAHSSRDSNEHQVPTRQPSSKTCRVCGDEIGYKENGELFVACHVCGFPVCRPCYEYERSEGNQSCPQCNTRYKRHKGCPRVAGDEEDNFDADDFDDEFPIKNHREDLDREHDVNHVGNGDYNQEKLHPNGQVFSSAGSVTGKDFDGDKDFYSNAEWQERVEKWKVRQEKRGLLNKEDGKEDQGEDDDYILAEARQPLWRKVPISSSLINPYRIVIVTRLVILAFFFRFRILTPANDAYALWLISVICEIWFALSWILDQFPKWFPITRETYLDRLALRFEREGEPNQLAPVDFFVSTVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFARRWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRSMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPNLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMHCDCWPSWCCFCCGGSRKSKSKKKSGKGLFSVFSKNKNKKKMMGKDYVRKGSGSMFDLEEIEEGLEGYEDLEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTNSQSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLIAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00272 1048 Pfam Zinc-binding RING-finger 27 101 IPR027934 -
Vimu10g00272 1048 SUPERFAMILY Nucleotide-diphospho-sugar transferases 317 853 IPR029044 -
Vimu10g00272 1048 Coils Coil 402 422 - -
Vimu10g00272 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 110 IPR013083 -
Vimu10g00272 1048 CDD mRING-HC-C4C4_CesA 34 84 - -
Vimu10g00272 1048 SUPERFAMILY RING/U-box 21 102 - -
Vimu10g00272 1048 MobiDBLite consensus disorder prediction 1 33 - -
Vimu10g00272 1048 FunFam Cellulose synthase 19 110 - -
Vimu10g00272 1048 MobiDBLite consensus disorder prediction 1 16 - -
Vimu10g00272 1048 FunFam Cellulose synthase 421 595 - -
Vimu10g00272 1048 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 417 596 IPR029044 -
Vimu10g00272 1048 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 207 1015 - -
Vimu10g00272 1048 Pfam Cellulose synthase 304 1041 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00272 Vimu-Chr10 1699868 1705242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00272 27 1048 Glycosyltransferase AT5G05170 66.110 0.0 1437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00272 K10999 - gmx:100781996 2033.84