Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00244 ATGGCACCGCCCCGAGAGCTTCAGGGCTTTTACTATGATCCTGAGAAGAACAGGTATTTCCCCATCAAAGGCCCCATTCCGGGCTCTTCTTCTAAACCCAAGAACCCTACTCCCAAAGCTCCTCAAACCCCTTCCAATCAGTTACAGAGTGGTAGGAGTTCTTGCAGGAAGCTCAGAAACAGAACCTTGCCGAAGCTGCTTCAGGCTAGAGAGTTGGAGGGTCGCCATGTCATTTATCCTCATCATTGCAGATGTAACTTTGTCGAGGAATATGAGAAAATTCAAGCATCTAAACCTGTGGTCTGGAGATACCGGGGAACAGATAAGATGGGTGTTTGTGCTTTGAAACACTTGCGCGTTGATGTGCAGACTTTGCAGGGGCAAACTGAAACTGATGTTTTGTTGACGGGCAGCATAAATGGCTCCTTGAGTTTTTCTGAAGTTGGAGGGGTCGGGCAATATTTTGATAATGGGACAAAATGGAGAGCAGATTGTGTGAGGAATTTTGTTAAAGGGAAAACATTTGACCATGATGAAGTGCGTAAGCCAGTTTTCAGACCTAATCGAGCTGCATTGCTTATGCCCTCCAGAATATCTTGTATAAGGTTGGGTCCAAAGTGCTCTCCTCAGGCAGAGAATGATGGTTCTGTTGCAGGACGTGTTTTGTATCCTTTTTTGGTTATTCTTCAATTTACTACATTGGGATCAGAAACGTCAGGTGGATCGGTTTATACTCTTGGTCTTGTTGAACCGTTAAATCTTGGACCAGGTATACTGAACACGTGGAGTGGACTTGAGGAAATTGCTTCTTTTAGATGTACCCTTTGGACAGCAGAATATGATTATAATAGACACCGGGCTGTAATTGGTACAAGTTTAGGAGGTGCTTCAGTGGATCTGGAAACCAGGATGGAAACATGGTTTTTACGTTGCAAAAGTGATGTTTTTGCACAACAAATTATTAATTCTGGAAATGTGATTATATGTGGGCTTAGAAATGGGGCCATTGTCACTGTAGATTTTCGTGAGAAAAGAGAAAGTCTTTCTGATAGACTTATTAGCCATCGGATACCATATAGTTCAAGCATTGGAGGTTGTAAAAAGGAATGGTTCAAGCTCAAAGGGGACATATTTCCTTCGCACACAATTAGGATGCCTTCATCTATATCTTCTTTGGTGTCACTTCAGTTTGATGAGCAGTACTTTCTAGCTAGCGCAATGGATGGATCGATTAGGCTATATGATCATCGTCTACTTCAGAGGGGTGCTGTTCAAAGTTATGAAGGGCATGTGAATTCTTATACTCGTATACAACTTGGTGTCGACCCAACTGAGAGATTTGTTACGTCAGGTGGAGAGGATTGCAAACTACGGTCATGGAGTCTCAAGTCTGGTGAATTGCTTTTTGAGGAGAAGTTCTCTGATTCAATTATCTCCACTATGTGCTATAAAACATACAGTAGTTGTAAAGCAGAAGAGGAAAACCAATTCAAGCGTGACTCCTCTCAGGGTGCATGGCTTGGATCACATGAAGGACTGTTTTATATGCGCTGGTGGTGA 1560 0.4288 MAPPRELQGFYYDPEKNRYFPIKGPIPGSSSKPKNPTPKAPQTPSNQLQSGRSSCRKLRNRTLPKLLQARELEGRHVIYPHHCRCNFVEEYEKIQASKPVVWRYRGTDKMGVCALKHLRVDVQTLQGQTETDVLLTGSINGSLSFSEVGGVGQYFDNGTKWRADCVRNFVKGKTFDHDEVRKPVFRPNRAALLMPSRISCIRLGPKCSPQAENDGSVAGRVLYPFLVILQFTTLGSETSGGSVYTLGLVEPLNLGPGILNTWSGLEEIASFRCTLWTAEYDYNRHRAVIGTSLGGASVDLETRMETWFLRCKSDVFAQQIINSGNVIICGLRNGAIVTVDFREKRESLSDRLISHRIPYSSSIGGCKKEWFKLKGDIFPSHTIRMPSSISSLVSLQFDEQYFLASAMDGSIRLYDHRLLQRGAVQSYEGHVNSYTRIQLGVDPTERFVTSGGEDCKLRSWSLKSGELLFEEKFSDSIISTMCYKTYSSCKAEEENQFKRDSSQGAWLGSHEGLFYMRWW 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00244 519 PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED 1 518 - -
Vimu10g00244 519 Pfam WD domain, G-beta repeat 424 461 IPR001680 GO:0005515
Vimu10g00244 519 Gene3D - 272 512 IPR015943 GO:0005515
Vimu10g00244 519 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 470 IPR001680 GO:0005515
Vimu10g00244 519 MobiDBLite consensus disorder prediction 14 54 - -
Vimu10g00244 519 SUPERFAMILY WD40 repeat-like 299 482 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00244 390 486 Miscellaneous Gene Families AT5G08390 27.273 2.95e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00244 K11799 - gmx:100798753 825.083