Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00240 ATGGCATCTTCCGAGGTGGAGATTGCTTCTTCCTCGCCCTTCGGTTCCGTTCTGAGGGACCGCAACCACCGCGAAGAATGCAGGGAAAGCAACGCCAAGGGCACGCATAATCATCATGCTAAGTTACAAAGAAACAACAAAAACTTTGTCACGGACGTCAACACGTGCCGGGGGGTGTCTTCTGATTCTGCAACAAACGAAAACAACAGCGACGGCAGCAAGAACAAAGGCGTTAACCAGCGTAAGGCTCCCAAAAACAGTCGCTTGGAGAAACTTCGTTTCACACGAGCCAACTCCTTCAACGACAACGGCAGCAGCAACAACAACAACAACAAAAAGGAGACCTCTTTGTCCTTGTTGATCAGCCCAAGACACTCACAGCTTCTCGATCGATGGGCAGCGAGACAGGCTCGGGAGATGGTGTCGGATTTGGAGAATGGAGCCGAACTGTTGTCAATGGAGGATGTTGACATTTTCCCAAGGACACCCAGTTCGACATCTGAGGAAGAGTCATGCTCTTTGGAGATCCCTAACATGGCTGCCTCTTCTCTTGTTCGGATATGGGAGAAGAGACTGAAACAATCAGGTGTCTCCAAAACGAACACATCGTCTGAGAAGATTGGTTCGTCCTCTTCTCCCACGAATGAGAATGCTAATGCTTCATTCCCCGAGGAAGAATGCTTTGATGGACCCTCAGGGAATGAAGAAAGTTCCTTTCAGTCCTCATTTCCTGAGTGGGAATCGAGTGACCATTCCGTTTCGCCACAAGCAAGGTCTGAGAGTGGTGTCAGTGTTGCTAGCATCATAAAGAAACTCACTTCTACCAGCCAGAATCAGAGTCCAACAGCTTCCTTTCTTGATGAGAATGAACAAGAAGGCTATTATAGTAGTAGTGTGACAGGTTCTCCTTGTAGAGAGCGTGAATGTGGTCAACAACAACCACCTTCAGAGCATAAATTGGTGTGTCCCCTGCGAATTAGAGGGCGTCAGGCATTCAACGATTTGCTTATGCAGATGGAGAATGACAGACACAGGGAGCTCAACAACTTGTCAGAGCGTGGAACCGTGTCTAAGTTTGCACAAAGAGGTCGCATTCAGGCATTGCTTCGGATTAAATTATTGCAACGTGATCTGGTGGCTAATGATCGCTCCCGGCAGAATTCAACATCATGTGAAGTAAACAACAGACAATCACAAGGGTCAGCAATTATGCAATTAAGGGAAAGATTTAGCAGTGGGGTTGAACCTAGAACTGCGGTCCAAGCAGAAGTAGCTAACCCAAGAAGTCCTCAAAGAGAGGCAGTTAACAAAACCACTCAATTGGGTAACTCTGCCACCACTGATCAAGTCAGAAAAGACACAAGAAACCAGACAGCTCATGAAAGTGCAAATCATGCCACAAAATCCCCACAAAAGTGTGTTTCATATACTAGAATAGATCATAATACAGAAGAAGCTCCTCCAAGTTCAGGTGTCGTGATCCAAGAAACAAATCAACGTTCAGATGCCAAGGCTGAACACAATAACTCAAAAGAAACTAGTGAGGCAACGACATCCATGACTGGTTCAGGTCTAAAAGAGATGACAGACAGGGCAGAAGCCGAACAGAATGGTAATACTAAAAGTAGTAATGATGAGACAGTAAATGAAGAAGATATTAGTAACGAGCAGTATGCTGAATCCAGTTGCCAGGAGACAGTAGAAGAGGCAAGTAATCAGAATTATGCTGAAAGCAGTTATGGTGATGAGATGGAGGGAGAGGAAACTGACCAGAATTGTGACTATGAAACTAATTATAACTGGATCAGTGAAATTTCTAGGCCTAAGAGCTATTGGGAAGAACGCAGGCAAGCCTGGTATAGAGAGATGCTTGAAACTGGTTCTCAGAATGAGGATATAAGGAGGCTTCTTGAAAGAAGAACAGTGTCAAGTTTCCTTTCTAGTGACTTTCGGGATAGAATGGATAGATTGATGGAATCTCATAGGGGAACTCAAGCACATTTAGTCAATAGCCAGGACTATGAGGAAAACAGCCAAGAATTGATGGCATTTTTACAAGAACGCTTGCATTCTGCAAGAGCTTCTCAAGATGGAAGAGATGCAATTGAGGAAGAAGAAGAGGAGGATAATGCAGATGAGCATGAAGAGGAGCATGAGCATGAGGATGAGAGCTTGATAAGCGATCCATATCATGAACCTGGTGATTATTCTAATCGTTCCTCATCATGCAGTTACAGGGACAATGAAGCCGGTGATTATTCTCCATCTCGACAACCTTATCAATCTCAATCTTTCTATCAGGACAGTCGGCAATCTGCATCTCCATCCACCAATCATCATTCAATGGAAATGGAACTCATATATGATTTGAGAGGGCACATGGAGCAACTCTATCATGAGATGTCTGAGCTGAAGAAAATAATAAAGGGCTGCATGAATATGCAGATGGAATTACAACAAACCATGAAAGTAGAGATTAACTCAGTTGAAAAGGAAGAAAAGAAGTCCCGTAATAGGACTCCAAAAAAGAAAGGCAACTGCTGCATTTGCTATGAGGTGAAAGTTGACTCTGTTTTGTACAGGTGTGGACACATGTGTGCGTGTCTCAAGTGTGCCATCGAGCTGCAATGTAACAGTGGAAAATGTCCCATATGTCGGGCTAAAATAGTGGATGTTGTTCGAGTATATATTGACGGTTAG 2700 0.443 MASSEVEIASSSPFGSVLRDRNHREECRESNAKGTHNHHAKLQRNNKNFVTDVNTCRGVSSDSATNENNSDGSKNKGVNQRKAPKNSRLEKLRFTRANSFNDNGSSNNNNNKKETSLSLLISPRHSQLLDRWAARQAREMVSDLENGAELLSMEDVDIFPRTPSSTSEEESCSLEIPNMAASSLVRIWEKRLKQSGVSKTNTSSEKIGSSSSPTNENANASFPEEECFDGPSGNEESSFQSSFPEWESSDHSVSPQARSESGVSVASIIKKLTSTSQNQSPTASFLDENEQEGYYSSSVTGSPCRERECGQQQPPSEHKLVCPLRIRGRQAFNDLLMQMENDRHRELNNLSERGTVSKFAQRGRIQALLRIKLLQRDLVANDRSRQNSTSCEVNNRQSQGSAIMQLRERFSSGVEPRTAVQAEVANPRSPQREAVNKTTQLGNSATTDQVRKDTRNQTAHESANHATKSPQKCVSYTRIDHNTEEAPPSSGVVIQETNQRSDAKAEHNNSKETSEATTSMTGSGLKEMTDRAEAEQNGNTKSSNDETVNEEDISNEQYAESSCQETVEEASNQNYAESSYGDEMEGEETDQNCDYETNYNWISEISRPKSYWEERRQAWYREMLETGSQNEDIRRLLERRTVSSFLSSDFRDRMDRLMESHRGTQAHLVNSQDYEENSQELMAFLQERLHSARASQDGRDAIEEEEEEDNADEHEEEHEHEDESLISDPYHEPGDYSNRSSSCSYRDNEAGDYSPSRQPYQSQSFYQDSRQSASPSTNHHSMEMELIYDLRGHMEQLYHEMSELKKIIKGCMNMQMELQQTMKVEINSVEKEEKKSRNRTPKKKGNCCICYEVKVDSVLYRCGHMCACLKCAIELQCNSGKCPICRAKIVDVVRVYIDG 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00240 899 MobiDBLite consensus disorder prediction 554 579 - -
Vimu10g00240 899 PANTHER BNAC05G24000D PROTEIN 1 898 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 431 452 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 1 113 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 44 82 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 233 261 - -
Vimu10g00240 899 ProSiteProfiles Zinc finger RING-type profile. 847 886 IPR001841 -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 734 780 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 701 719 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 93 113 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 382 406 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 274 309 - -
Vimu10g00240 899 SUPERFAMILY RING/U-box 846 891 - -
Vimu10g00240 899 CDD mRING-HC-C3HC5_NEU1 844 896 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 460 499 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 691 780 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 1 17 - -
Vimu10g00240 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 822 898 IPR013083 -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 195 261 - -
Vimu10g00240 899 Coils Coil 703 724 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 382 589 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 274 316 - -
Vimu10g00240 899 Pfam Zinc finger, C3HC4 type (RING finger) 844 891 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 18 36 - -
Vimu10g00240 899 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00240 Vimu-Chr10 1494130 1497822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00240 818 896 Miscellaneous Gene Families AT4G39050 30.380 3.24e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00240 - - vun:114162588 1442.56