Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00239 ATGCGTTCTCGATCTCATTATGGATTTTCGATTACCCAAAATGCCCTCGCGCTGCTTTATTTATTCTGCATCTTCACCAACCCACCTGCGTCCACCGCTCTCAACTTCACCGCGCTGCTCTCCACCGTCCCGGACCTCTCCCAATTCACCTCGCTCCTTGCCTCCGCAACGCCTATAACGGCGGATCTCTCCGACCGCTCCTCCCTCTCCATCCTCGCCGTCCCCAACGCCTATCTCGCCGCCGATGACCACCTCGCCCGCCACCACCTCTCCCCCGCTGCCCTCGCCGATGTCCTCCGCTACCACGTCCTCCTCCAGTTCCTCTCCTGGTCCGACCTCCGTGCCCTCCCCCCCGCCGGGAAACTCGTCACCACTCTCCTCCAGACAACCGGACGCGCCACCGACAACTTCGGCTCCGTGAACCTCACGCGCGACCCTCAATCCGGCCTCGTCTCGATCCGCTCCCCCGCCCCTTACTCCCCCTCAAACGTCACCGTTTTGTCCCTCGTCAAAACCCTACCCTACAATGTCACCATCTTCGCCGTCAATTCCCTCCTCATCCCCTACGGCCTTGACCTCATGGCGTCCGAAACCCGCCCCAACATCGTCCTCAACATCACCAAAGCCCTAATCGACGGCCACAACTTCAACGTCGCCGCCTCAATGCTCGCGGCCTCCGGCGTAGTTCAGGAATTTGAGGCTGATGAGGGTGGTGCTGGAATCACTCTTTTCGTACCGGTGGATGATGCTTTTGCTGATCTTCCACCCTCTGTGGCCCTGCAGTCTCTACCTGCAGATAAAAAAGGGGTGGTTCTTAAATTCCATGTCCTCCATTCCTATTATCCTCTTGGCTCGCTTGAATCGGTTGTTAACCCCTTTCAACCCACCCTCGCCACTGAGGCCATGGGTGCTGGTAGTTTCACACTCAACATTTCGCGTGTGAATGGCTCTGTTGCCATCAACACCGGCATTGTACAGGCCTCAGTTACGCAGACCGTCTTTGATCAGAACCCTGTTGCCATTTTTGGGGTTTCCAAGGTTCTCTTGCCGAGGGAGATTTTTGGCAAGAATCCGATGGTCACTGCCAAGCCTCTTGAAGGTGCTCCTCCGCCGGATGAGGAAACTCTGTCACCAGAGAATTCGCCGGGATTTGGTGGACAGCCCTCACACCTATCATCACCGCCGGGGTTTCGCGAAGATGTGCGGTCACATGGTGGTGGTACAGGATTGTCCTTTGCTGTTGTTTTTTGCTGTATAGGATTGTATCTTGTGGGTGTGCCTTGCAGAGTAGCAAATTTCGTTTGGTACAGGAGTTTGTGCTGGTTGCTTCTTACTGTTATCTTACACCTAGATGACCGTCAGGATACGGGTGATAATTACTTGTTTGCTTGTTCAAATATCAAGAAATTGTTTCCAGTAAGATTAGCTTTGCCTATTGTTAAAAGTAGTATTTGGTGGTTGATATCTAAGCTGGGTACAGCTGGAGTTAGCGTTGTCGTTGTTTTAGGACCAGGAAAGACACTTTATGGACTTATGGTCAGGATAAAGATACTGAAAAGTGACAACTACATTGATAAGATTGAGCAGAACCATGACTTTTAG 1602 0.53 MRSRSHYGFSITQNALALLYLFCIFTNPPASTALNFTALLSTVPDLSQFTSLLASATPITADLSDRSSLSILAVPNAYLAADDHLARHHLSPAALADVLRYHVLLQFLSWSDLRALPPAGKLVTTLLQTTGRATDNFGSVNLTRDPQSGLVSIRSPAPYSPSNVTVLSLVKTLPYNVTIFAVNSLLIPYGLDLMASETRPNIVLNITKALIDGHNFNVAASMLAASGVVQEFEADEGGAGITLFVPVDDAFADLPPSVALQSLPADKKGVVLKFHVLHSYYPLGSLESVVNPFQPTLATEAMGAGSFTLNISRVNGSVAINTGIVQASVTQTVFDQNPVAIFGVSKVLLPREIFGKNPMVTAKPLEGAPPPDEETLSPENSPGFGGQPSHLSSPPGFREDVRSHGGGTGLSFAVVFCCIGLYLVGVPCRVANFVWYRSLCWLLLTVILHLDDRQDTGDNYLFACSNIKKLFPVRLALPIVKSSIWWLISKLGTAGVSVVVVLGPGKTLYGLMVRIKILKSDNYIDKIEQNHDF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00239 533 FunFam fasciclin-like arabinogalactan protein 4 33 188 - -
Vimu10g00239 533 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 400 IPR033254 -
Vimu10g00239 533 SUPERFAMILY FAS1 domain 29 189 IPR036378 -
Vimu10g00239 533 MobiDBLite consensus disorder prediction 360 398 - -
Vimu10g00239 533 FunFam Fasciclin-like arabinogalactan protein 4 204 351 - -
Vimu10g00239 533 Gene3D FAS1 domain 204 351 IPR036378 -
Vimu10g00239 533 Pfam Fasciclin domain 215 350 IPR000782 -
Vimu10g00239 533 SUPERFAMILY FAS1 domain 210 350 IPR036378 -
Vimu10g00239 533 ProSiteProfiles FAS1/BIgH3 domain profile. 33 186 IPR000782 -
Vimu10g00239 533 Gene3D FAS1 domain 26 188 IPR036378 -
Vimu10g00239 533 ProSiteProfiles FAS1/BIgH3 domain profile. 203 348 IPR000782 -
Vimu10g00239 533 SMART fasc_3 242 351 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00239 Vimu-Chr10 1487291 1491180 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00239 - - pvu:PHAVU_009G244800g 784.637