Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00232 ATGGCAACCACATCGCCATCTGCATCTGCAGCATTGCATCATCAGTTTCTCGAAAGCCCTCGCGAGAACGGCACAAACGATTTTGAAGCTGAGATAGTTGATGTGGAAGAATCGCTTCCAAATCTTTCTTCATTCGTGGAGAACAAAGAAGAGAATAATGAGGAAGATCAAAAGTCCACAACCAACAAGAGGTATATGCCTCTTTTACTTATCAATTACGTTCTACTTTTTGTTGGGTCATTCTCTTCGAGTTTGATGTCAAAATATTACTTCATCCACAAAGGTGCTAGCAAATGGGTCTCTACATGGGTTCAGTGTCTTGGTTTTCCTATCCTACTCTTTCCCATTTTTCTCCCAGTTGTCCTTAAATACAAAAAAAGAAAACCTTTTGAAGGTTTCAGCAAAAAGATGTTGTTGTTATCCGTTTTAGTTGGTATCATGTTAGGGTTTAACAACCTTTTAGTCTCATGGGGTGTAGCATACCTTCCAGTTTCAACCTCATCACTTCTTTTGTCCACCCAGTTAGTTTTCACCCTTATTCTGTCTTCCCTGATTGTGAAACAAAAAATAACCTTTACAAACCTAAATTGTGTGATCCTCATAACCGTTACTTCCATCATTCTAGCCTTGGATTCGAGTCACGAGAAGCCAGCAGGGCTCACAAACAAAGAATACTACATAGGGTTCACCTGCACCATCGGTGCAGGTTTTTTGTTTGCTTTGTATTTGCCAGTGATGGAGAAGATCTACCAGAAGGTGAACTGCTACGAAATGGTGATGGAAATGCAGCTCATAATGGAGATTGCAGCAACAGTATTGGCCACTGTAGGCATGGCATGTGACGGAGGGTTTTCTGACATGAAAAAAGAGGCCGAGAGCGTTTTCGACAAAGGAACCGCAGCTTATTGGGTAACCATTTTGTCGACTGTGGTGACATGGCAATGTACCTTTATGGGAACTGCAGGAATGGTTTTTCTGACATCTTCTCTAACTGGGGGGATTTGTTCCACTGCTCTGTTGTCCATAAATGTGTTGGGAGGAGTGGTGGTTTATAAAGACCACTTTGGAGGTTACAAGGCTGTTTCAACTGTTTTGTGCATTTGGGGCTTCTGCTCTTATGTCTTTGGCATGTACATCAAAACGAAGAAAAAGAAGATTGTAAGGAAGAACAGCAGCAGTACTGGATCTTCCACTGAGTTGATCCCTAGAAACTCTGATGGAATTTAG 1227 0.4173 MATTSPSASAALHHQFLESPRENGTNDFEAEIVDVEESLPNLSSFVENKEENNEEDQKSTTNKRYMPLLLINYVLLFVGSFSSSLMSKYYFIHKGASKWVSTWVQCLGFPILLFPIFLPVVLKYKKRKPFEGFSKKMLLLSVLVGIMLGFNNLLVSWGVAYLPVSTSSLLLSTQLVFTLILSSLIVKQKITFTNLNCVILITVTSIILALDSSHEKPAGLTNKEYYIGFTCTIGAGFLFALYLPVMEKIYQKVNCYEMVMEMQLIMEIAATVLATVGMACDGGFSDMKKEAESVFDKGTAAYWVTILSTVVTWQCTFMGTAGMVFLTSSLTGGICSTALLSINVLGGVVVYKDHFGGYKAVSTVLCIWGFCSYVFGMYIKTKKKKIVRKNSSSTGSSTELIPRNSDGI 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00232 408 Pfam Purine nucleobase transmembrane transport 68 383 - -
Vimu10g00232 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 116 214 - -
Vimu10g00232 408 PANTHER OS09G0467300 PROTEIN-RELATED 53 388 IPR030182 GO:0015211|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00232 Vimu-Chr10 1411489 1412715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00232 48 376 Organic Solute Cotransporters AT1G30840 62.538 5.25e-142 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00232 - - gmx:100795076 502.671