Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00205 ATGCCCCACATTCATTTCTCTTTCTCTTCTTCCAACTCTTCAATCCTTTCAATCCTTCAATCCTTCAATTCAAGTTTCAACCACTACTTCCACTTCCCTCTCTCAATGGATGCAAAACCTCCTCAACTTGCTGCACAACCTTTAAACTATCAGACATGGTTCTTGAAAGTTTCAATCCACTGTGAAGGTTGCAGGAGGAAAGTAAAGAAAGTTCTGAAGAGCATTGATGGTGTTTTCACTGCAACAATAGACCCACAGCAGAACAAAGTAACAGTCACTGGAAGTGTTGCTGTGGAGACCCTTCTCAGGAAGCTCGTCAGAGCCGGAAAACAAGCCGAGATTTGGCCGGAGAATGACGGAAAAATCTCCATAAATGGGCGGCAGCAGCAGAAGAAGAAGAAAAATGAAGCAAGAGAACCACAGAGAGTGGAAAATCACAACGGAACTGAAAATGCTTCTGCCAAGTGTAACAGTGAGAAAAAAAGCAGCAGCATTGACTCGCCGGTAAAGTCCCCCTCCGTCTACCGGATGCCGTCGGAGGGTGGTCGGAGCGAAGGTGGTGCCGGCTCTGGTAAGAAGAAGAAGAAGAAATTGCACAGTGGTGGTGGGAATGGAAACAGTGGTTTGAGTTCAGTGGAAGCAGCTACTGGTGAACCTGCACACACTGGATTGCAGTTTCAAGATCTTGTGGGCCCAGTGAATGTGAACCCTACACGTCAGTATTTGCTTTTATATCCAGAAAGTGGTGTTGCAGCTTATAACAGATTGTATCCTTCTTACTACGTTCCATCTTCACCCTACACGTGGGCTGGTGTAGACCAAGATTACCATCACTTTCAATCACCACCGTTGGTTTCCTTTGAGATCTTCAGTGATGAAAATGTTAATGGGTGTTCTGTTATGTGA 906 0.4536 MPHIHFSFSSSNSSILSILQSFNSSFNHYFHFPLSMDAKPPQLAAQPLNYQTWFLKVSIHCEGCRRKVKKVLKSIDGVFTATIDPQQNKVTVTGSVAVETLLRKLVRAGKQAEIWPENDGKISINGRQQQKKKKNEAREPQRVENHNGTENASAKCNSEKKSSSIDSPVKSPSVYRMPSEGGRSEGGAGSGKKKKKKLHSGGGNGNSGLSSVEAATGEPAHTGLQFQDLVGPVNVNPTRQYLLLYPESGVAAYNRLYPSYYVPSSPYTWAGVDQDYHHFQSPPLVSFEIFSDENVNGCSVM 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00205 301 Pfam Heavy-metal-associated domain 57 108 IPR006121 GO:0046872
Vimu10g00205 301 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 46 301 - -
Vimu10g00205 301 MobiDBLite consensus disorder prediction 119 213 - -
Vimu10g00205 301 Gene3D - 49 114 - -
Vimu10g00205 301 CDD HMA 55 113 IPR006121 GO:0046872
Vimu10g00205 301 ProSiteProfiles Heavy-metal-associated domain profile. 50 113 IPR006121 GO:0046872
Vimu10g00205 301 MobiDBLite consensus disorder prediction 146 170 - -
Vimu10g00205 301 MobiDBLite consensus disorder prediction 129 145 - -
Vimu10g00205 301 SUPERFAMILY HMA, heavy metal-associated domain 49 116 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00205 Vimu-Chr10 1229570 1230972 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00205 - - vra:106761779 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00205 10 1229570 1230972 Vimu10g00205 10 1229570 1230972 ECH
Vimu7g01811 7 16520767 16522022 Vimu10g00205 10 1229570 1230972 PCT