Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00200 ATGCTGGAGCGGTGCCTGGGGACGCGGCGCGTGCGGCAGATTCATCGCGCGTGCCGGCACAGTACGGTGACTTTCCTCTGCCTCTTCCTCACGGTGGTCGTCCTCCGCGGCACAATCGGCGCTGGCAAGTTCGGTACGCCGGAGCAGGACTTCAACGAGATCCGCCACCACATCTCCGCCGCCCGCGCCCGGCGCGTCCTCGAGGAGACCAAACCCGACGCCGGTTCCAACGCCGATTCCAACCCTAACAACTACGCCACCTTCGATCTCTCTAAGATCCTCGTCGACGAGCCTCCCACGGAGGACGAAAAGCGTGACCCAAATGCTCCCTACACTCTCGGACCCAAAATCTCTGATTGGGATGAACAGCGCCGAGCCTGGCTCCGAGCCAACCCTGAGTACCCTAACTTCATACGACCCAACAAGCCACGTGTACTTTTAGTGACCGGTTCGTCCCCCAAACCGTGTGAAAACCCGGTCGGTGATCACTACCTTGTGAAATCGATCAAGAACAAGATTGACTATTGTAGGGTTCATGGGATTGAGATTTTCTACAACATGGCTCTTTTGGACGCTGAGATGGCAGGGTTTTGGGCCAAGCTTCCCCTGATTCGTAAACTTTTACTGTCGCACCCTGAAGTGGAGTTTCTCTGGTGGATGGACAGTGATGCAATGTTCACCGACATGGCTTTTGAGGTTCCCTGGGAGAGGTACAAAGATTCCAACTTTGTTATGCACGGGTGGAATGAGATGGTGTATGACGAGAAGAATTGGATTGGGTTGAACACTGGGAGTTTTCTTTTGAGGAATTGCCAATGGTCTTTGGATATTCTAGATGCTTGGGCGCCTATGGGGCCTAAAGGGAAGATTAGGGATGAGGCTGGGAAAGTGCTCACTAGGGAGCTTAAGAATAGGCCTGTTTTTGAAGCTGATGATCAATCTGCTATGGTTTATTTGTTGGCCACTGGGAAGGAAACATGGGGTAAGAAGGTTTACCTTGAGAATCATTATTACTTGCACGGGTATTGGGGGATTTTGGTGGACCGTTATGAGGAGATGATTGAGAATTATCATCCGGGACTTGGGGATCATAGATGGCCTTTGGTGACCCACTTTGTGGGGTGCAAGCCTTGCGGGAAGTTTGGGGATTACCCTGTGGAGAGGTGCTTGAAGCAGATGGATAGAGCTTATAATTTTGGGGATAACCAGATTTTGCAGATGTATGGCTTCACTCACCAGTCCCTTGCTAGTCGCAGGGTGAAGAAAGTGAGGAATGATACCAGCAACCCTCTTGAGGTCAAGGATGATCTTGGGTTGCTTCACCCTGCTTTCAAAGCTATCAAGCTCCCTTCTTCTTGA 1359 0.5166 MLERCLGTRRVRQIHRACRHSTVTFLCLFLTVVVLRGTIGAGKFGTPEQDFNEIRHHISAARARRVLEETKPDAGSNADSNPNNYATFDLSKILVDEPPTEDEKRDPNAPYTLGPKISDWDEQRRAWLRANPEYPNFIRPNKPRVLLVTGSSPKPCENPVGDHYLVKSIKNKIDYCRVHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDSNFVMHGWNEMVYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRDEAGKVLTRELKNRPVFEADDQSAMVYLLATGKETWGKKVYLENHYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHQSLASRRVKKVRNDTSNPLEVKDDLGLLHPAFKAIKLPSS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00200 452 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 7 436 IPR008630 GO:0016020|GO:0016757
Vimu10g00200 452 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 141 296 IPR029044 -
Vimu10g00200 452 Pfam galactosyl transferase GMA12/MNN10 family 142 381 IPR008630 GO:0016020|GO:0016757
Vimu10g00200 452 FunFam xyloglucan 6-xylosyltransferase 2 141 292 - -
Vimu10g00200 452 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00200 Vimu-Chr10 1213234 1214592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00200 1 452 Glycosyltransferase AT3G62720 76.201 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00200 K08238 - gmx:100818287 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00200 10 1213234 1214592 Vimu10g00200 10 1213234 1214592 ECH