Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00184 ATGGAGGTGGAGTCCGTGGAGCCACAGTCCTTGAAGAAGCTGAGCTTCAAGTCATTGAAGCGCGGTCTCGATCTTTTCTCTCCCATTCACGGTCAGCTCGCTCCTCCCGATGCCGATAGCAAGAAAATTCGCATTAGCCATAAGGTGAGCGTGGAGTATGCTGGAATCAAAGGCACTGCCAATCAGCCTGCTCGTCAAGTAAACTCTGCTGCACAGGATCGCTCTCAGCAAGCAGGGTCTTCTAATGTTCTTGCTCTTCCAGGTCCCAGAGATTCCAAAGATTTTCAGAAAGGAGGGTCGCAAAATGCTTTGGTTGTTGGTCCTTCTATGCCATCCACAGCACCGAACGATACTGGCTTTCAGAGCAAAAGTACCGCAATCATTTCTGCCTCTGGTTCTTCTGAGAGGAACTTATCTACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGTATGGCATGCTCCATGGAAGAACTACAGGGTCATCAGCGGTCACTTAGGATGGGTGAGATCTATTGCAATTGATCCCAGTAACACATGGTTTTGTACTGGTTCTGCAGATCGTACTATCAAGATATGGGACTTGGCAAGTGGAGTGTTAAAACTCACATTGACAGGCCACATTGAACAAATTAGAGGACTCGCTGTTAGCAACAGGCATACATACATGTTCTCTGCGGGTGACGATAAACAAGTTAAATGCTGGGATCTTGAACAGAATAAGGTTATTAGGTCTTATCATGGTCATTTGAGTGGTGTTTACTGCTTGGCACTCCATCCCACTATTGATGTTTTACTAACTGGTGGACGTGATTCTGTCTGTCGGGTTTGGGATATACGTAGTAAAATGCAGATTCATGCCCTTTCAGGTCATGATAACACTGTATGCTCTGTGTTTACGCGGCCGACGGATCCCCAAGTTGTTACAGGTTCACACGACACTACCATCAAGATGTGGGACCTAAGATATGGTAATTTACGTGATTATATGCACAGTCTGACATGTGACTTTCATCCAGGTAAAACAATGTTAACTCTCACAAACCATAAAAAATCTGTTCGTGCAATGGCCCAACATCCCAAAGAGCAATCTTTTGCATCTGCTTCAGCTGACAATATTAAAAAGTTCAGCCTTCCAAAAGGAGAATTTTTTCACAATATGCTCTCTCAACAGAAAACTATCATCAATGCAATGGCTGTCAATGAAGAGGGTGTGATGGTTACTGGAGGTGACAATGGCAGTATGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAAGCCCAAACCATTGTGCAGCCCGGATCACTGGACAGTGAAGCTGGTATTTATGCTTGTACCTATGATATTACTGGTTCAAGGCTTATAACATGCGAAGCTGACAAGACGATAAAAATGTGGAAGGAAGATGAGAGTGCCACCCCAGAAACCCACCCTCTTAACTTCAGGCCTCCTAAAGACATCCGTCGATTCTAG 1491 0.45 MEVESVEPQSLKKLSFKSLKRGLDLFSPIHGQLAPPDADSKKIRISHKVSVEYAGIKGTANQPARQVNSAAQDRSQQAGSSNVLALPGPRDSKDFQKGGSQNALVVGPSMPSTAPNDTGFQSKSTAIISASGSSERNLSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSIAIDPSNTWFCTGSADRTIKIWDLASGVLKLTLTGHIEQIRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKMWDLRYGNLRDYMHSLTCDFHPGKTMLTLTNHKKSVRAMAQHPKEQSFASASADNIKKFSLPKGEFFHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYACTYDITGSRLITCEADKTIKMWKEDESATPETHPLNFRPPKDIRRF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00184 496 MobiDBLite consensus disorder prediction 475 496 - -
Vimu10g00184 496 CDD WD40 162 473 - -
Vimu10g00184 496 Gene3D - 145 496 IPR015943 GO:0005515
Vimu10g00184 496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 202 - -
Vimu10g00184 496 FunFam Putative pleiotropic regulator 1 145 496 - -
Vimu10g00184 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515
Vimu10g00184 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515
Vimu10g00184 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Vimu10g00184 496 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 5 331 IPR045241 GO:0000398
Vimu10g00184 496 SMART WD40_4 201 240 IPR001680 GO:0005515
Vimu10g00184 496 SMART WD40_4 285 324 IPR001680 GO:0005515
Vimu10g00184 496 SMART WD40_4 435 473 IPR001680 GO:0005515
Vimu10g00184 496 SMART WD40_4 159 198 IPR001680 GO:0005515
Vimu10g00184 496 SMART WD40_4 243 282 IPR001680 GO:0005515
Vimu10g00184 496 SMART WD40_4 384 423 IPR001680 GO:0005515
Vimu10g00184 496 SMART WD40_4 343 381 IPR001680 GO:0005515
Vimu10g00184 496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 245 - -
Vimu10g00184 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Vimu10g00184 496 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
Vimu10g00184 496 Pfam WD domain, G-beta repeat 245 282 IPR001680 GO:0005515
Vimu10g00184 496 Pfam WD domain, G-beta repeat 161 198 IPR001680 GO:0005515
Vimu10g00184 496 Pfam WD domain, G-beta repeat 206 240 IPR001680 GO:0005515
Vimu10g00184 496 Pfam WD domain, G-beta repeat 289 324 IPR001680 GO:0005515
Vimu10g00184 496 SUPERFAMILY WD40 repeat-like 155 473 IPR036322 GO:0005515
Vimu10g00184 496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 326 - -
Vimu10g00184 496 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Vimu10g00184 496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 285 - -
Vimu10g00184 496 MobiDBLite consensus disorder prediction 61 83 - -
Vimu10g00184 496 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Vimu10g00184 496 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Vimu10g00184 496 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Vimu10g00184 496 MobiDBLite consensus disorder prediction 60 101 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00184 247 472 Miscellaneous Gene Families AT5G08390 27.586 1.15e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00184 K12862 - gmx:100775526 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00184 10 1108506 1114548 Vimu10g00184 10 1108506 1114548 ECH