Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00183 ATGGAACCTCACAGTTTGTGTTACTCATTGGAAATATTGACACAACATATGAACACTGTCACTGAGCTTATTATCTCACCTTGTCATTGTCTTGCAGTGCTTTTGGTTGCATGTGTTGCAACCCTCTACGCTGCATGCAGAAGAAAAACACCAATTTATTTGATAGACTTCAACTGCTACTGTCCACCCAGTTCTTATAGGCTACCGCTGGCCATGTTTGAAGAGAATCAATTTTATGATGACATGGACCCAGAGGCTGTTGCTTTCCAATGCAAGATCATGGCCAAATCAGGATTCAGTGAGCTAACGTCCATTTCTCCATCTCTTGCACAGATACCCAAAATCAAAGCTCTCTCCTTTGCCCTTGAGGAGGCAGAGACAATCATGTGTTCAGTGATAAAAAACCTGTTTGAGAAGAACGAGATAAACCCTAAAACCATTGACATACTCATCACTAATAGTAGTGTCTTCTGCCCCACCCCATCTCTCAGTGCCATGGTGGTTAACAGGTTCAGAATGAGGAGCAACATCATGAGTTTCAACCTATCTGGTATGGGATGCAGTGCTGGAATCATTTCAATGAGTCTAGCTAAAGACTTGTTGAGAGTTCATAGGAACTCACTAGCTTTAATAGTAAGCACTGAGACGCTGAGTCTGAATTGGTACACTGGTAAAGTCCCTTCTATGCTGCTATCTAATTGCCTATTCAGAATGGGTGGGGCAGCTATATTGATGTCTAGTAGGGTCCAAGATAGGCACAAGGCAAAGTATAAACTGCAGCATATTGTCAGAACAATCACTGCACAGGATGATGAATCTCATGGCTGTGTTTACCAACAAGTGGATCCAGAGGAGAAAGAAGGTGTATCCATATCAAAGAGCATAGTTAATGTGTCTGGAGATGCACTGAAGAAAAATATAGCTTCACTAGGACCATTGGTTCTGCCTTTGAGGGAGCAATTCTTGTATTTATTTTCCATAATTTGTCGCAAAATGTGGAGTACAGGAAGAATAAGCATCTACACTCCAAATTTCAACCATGCTTTTGAGCATTTCTGCATACATTCAGGGGGGAGAGCCATCATTCAAGCGGTTGAAAGAAACTTAAGGCTAAGGAAACAGGACGTGGAGCCATCAAGCATGACTCTCTACAGGTTTGGAAATATTTCATCATCTTCAATTTGGTATGAGCTGAGCTACATAGAAGCAAAAGGGAGGATGAAATGTGGGGACAGGGTGTGGCAAATTGCCTTTGGAAGTGGATTCAAGTGTAACAGTGCTGTGTGGAAATGTGTTTGTGACATGAAGCCAGACACCTCCACTGCATGGAGGGATACAATTCATTCGTACCCAGTGGATAATATTATGAGAACAAACTGA 1380 0.421 MEPHSLCYSLEILTQHMNTVTELIISPCHCLAVLLVACVATLYAACRRKTPIYLIDFNCYCPPSSYRLPLAMFEENQFYDDMDPEAVAFQCKIMAKSGFSELTSISPSLAQIPKIKALSFALEEAETIMCSVIKNLFEKNEINPKTIDILITNSSVFCPTPSLSAMVVNRFRMRSNIMSFNLSGMGCSAGIISMSLAKDLLRVHRNSLALIVSTETLSLNWYTGKVPSMLLSNCLFRMGGAAILMSSRVQDRHKAKYKLQHIVRTITAQDDESHGCVYQQVDPEEKEGVSISKSIVNVSGDALKKNIASLGPLVLPLREQFLYLFSIICRKMWSTGRISIYTPNFNHAFEHFCIHSGGRAIIQAVERNLRLRKQDVEPSSMTLYRFGNISSSSIWYELSYIEAKGRMKCGDRVWQIAFGSGFKCNSAVWKCVCDMKPDTSTAWRDTIHSYPVDNIMRTN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00183 459 Gene3D - 77 431 IPR016039 GO:0016746
Vimu10g00183 459 SUPERFAMILY Thiolase-like 260 431 IPR016039 GO:0016746
Vimu10g00183 459 PIRSF Very_long_ch_3-ktacl-CoA_syn 4 459 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu10g00183 459 Pfam FAE1/Type III polyketide synthase-like protein 46 332 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vimu10g00183 459 PANTHER 3-KETOACYL-COA SYNTHASE 19 453 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu10g00183 459 CDD CHS_like 31 429 - -
Vimu10g00183 459 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 349 430 IPR013747 -
Vimu10g00183 459 SUPERFAMILY Thiolase-like 39 248 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00183 Vimu-Chr10 1106231 1107610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00183 12 452 Acyl Lipid Metabolism Gene Families AT1G71160 52.489 2.88e-166 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00183 K15397 - gmx:100783404 835.484