Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00178 ATACGGTTTCAAAATTCACACCACCGAGTTCCGTCACTTCCCCAAAAGCTAACCAGAGCTCAATCGGAGATAGAGAAAAACAAAATGAGTGAAGAAGCGAAAAAGAGCATTGCCGGACCTCTAACGGTGAGGCCCAACATCGATGAACGGAAACCGTCACCGTTACCGGCCGTCCCTCTGAAGAAGGTCATCATCAAGAGCGCCGACATGATTCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGCCTTTGAGAAGTACAATGTAGAGAAAGATGTTGCGGAGCAGGTAAAGAAGGAGTTCGATAAGAGGCACGGCCCCACTTGGCATTGCATCGTTGGTCGTAATTTTGGTATTTCCTTTTGTTTTTTTTTTTAA 378 0.4683 IRFQNSHHRVPSLPQKLTRAQSEIEKNKMSEEAKKSIAGPLTVRPNIDERKPSPLPAVPLKKVIIKSADMIPDMQKEAVDIAAFEKYNVEKDVAEQVKKEFDKRHGPTWHCIVGRNFGISFCFFF 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00178 125 SMART Dynein_light_2 58 124 IPR001372 GO:0007017|GO:0030286
Vimu10g00178 125 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 60 124 IPR037177 GO:0007017|GO:0030286
Vimu10g00178 125 FunFam Dynein light chain 59 123 - -
Vimu10g00178 125 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g00178 125 MobiDBLite consensus disorder prediction 1 52 - -
Vimu10g00178 125 SUPERFAMILY DLC 60 122 IPR037177 GO:0007017|GO:0030286
Vimu10g00178 125 PANTHER DYNEIN LIGHT CHAIN 61 120 IPR001372 GO:0007017|GO:0030286
Vimu10g00178 125 Pfam Dynein light chain type 1 62 121 IPR001372 GO:0007017|GO:0030286
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00178 Vimu-Chr10 1075664 1076175 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00178 K10418 - gmx:100805882 173.711