Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00176 ATGCTGGGTCTGAGTGTAGTGTTAGAAGCACAGAAAGGTAGTGCTAGCAGCAAGAAAACTCCACAAGTGATTAGCAAAACGACGGTGCTTAGCAGTATGAACAAACACTCACCTTCTGCAGTGAACGCTTCTCAGCAATCTCCTTTTCAGGAACCAACGTTTTTACATCAATGTTTTCTCTGCAGAAAGAGACTCTTACCTGGGAAAGACATCTACATGTACAAGGCCTTCTGCAGCGTGGAGTGCAGGTGCAAACAGATTTTCATGGATGAGGAAGAGAGTTTTGAGAAAGACAAGTTTTTTTTGAGTCCCACATCGTCTGCTTCTTCTTCCTCACAAGCTCCTAGTCATGAGAAGGGAGGAAGAATTTGA 372 0.4382 MLGLSVVLEAQKGSASSKKTPQVISKTTVLSSMNKHSPSAVNASQQSPFQEPTFLHQCFLCRKRLLPGKDIYMYKAFCSVECRCKQIFMDEEESFEKDKFFLSPTSSASSSSQAPSHEKGGRI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00176 123 ProSiteProfiles Zinc finger FLZ-type profile. 53 94 IPR007650 -
Vimu10g00176 123 MobiDBLite consensus disorder prediction 102 123 - -
Vimu10g00176 123 PANTHER FCS-LIKE ZINC FINGER 5 19 114 - -
Vimu10g00176 123 MobiDBLite consensus disorder prediction 102 117 - -
Vimu10g00176 123 Pfam zinc-finger of the FCS-type, C2-C2 45 92 IPR007650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00176 Vimu-Chr10 1058655 1059303 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00176 - - gmx:102670271 135.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00176 10 1058655 1059303 Vimu10g00176 10 1058655 1059303 ECH