Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00173 ATGAAGCAGCACTTTTACATCGTTGAAAAAAACAGTTGGTGGGATGACAGGGGCACATTCCAGGCCGGTGACACAGCAACCATCAAAGTAAAAGTGCTTGAGAATGCTGATAAGATTGACAAAAAAGTTTTCAATCCCACACTAATTGTGAATGGAAAGGAAGGGAACAGTTCCTATGTGTCTACTGTGTTGTCAGATTTCGAAGGAGACCCAAATGAATGGAAGATCTTCTTTACCCCCATCAGGGTTGGATTGTTTAATGTACTCATCAGTGAGGAGCGTTACAAAGTTGATGATTCATCTTTGCATTTCCAAGTTGAACCAGGGAACATGTACCCTTCTGTGTGCGTTGCATCATGGAAGGGCGTGAGACATGAGTATGAAGCTGGTTCAAAAGCTACGCTTATGGTGCTACTTAAAGATGCATTTGGGAACGGTATCTCTAAGATGACTCAAGTGTCCTATTTGCCTGATTTCAAGTTGTCTGTTTTGCATGAAAATGGTTCTGTTGCAAGTGCTCCAGATATCTTTAACATGGGGTGGACTGAGTTTGATTATATAGTCATTGAGTTTATTGTGACGAAAGCTGGAAAGTTTTCATTGAGCTTAGAAGGAGGAAATCAAACCTTGAAGGGTTCTCCATTACCATTGAAGCTTGACCTCTCTCTTACTCAATTGCCAGGAGCTATAGATGTCTCTAACTGTATCGCCAAATGGAACGTTGAATCTCATGCATGGCAATTGTCTTCCAAGATGGAAATCTTTATACATCAGTTAGATAAATACGGAAATCTGGTTTCTGGACTGTATCCTTTTGATTCTGAAGTTGTTGAAACTGACACAAACTTGTCCATACCGATATCAGATCTCCATTTTCAAGAAGTGGATGCTGGAATTCAGTTGTTTTCGTTTAGCAATTTTGAGCCAGGGAACTTCCTATTGACAATATATGATTCCAAGCATAACAAAAGCCTTTCCAACATGCCATATGTTTATACTGTTTTTATAGTAGGTTACTGCGATGGGGTTAAAAGTGTTGTTAATGGATCAGGTTTAAATGATTCAGTAGCTGGTGTAAAGGACGAATTCTCTGTGTATTTGAATGACATCTATCAATATCCTTCCCCTGTCCAAGCAAACATACTTCAAGTACAAATTTCAATAGAAAATGACTCGTACAGAGTTATGCCAGTCATATATCCTATTCTTGACAGTAATGGGAGCAGAATAGCTTCAGGATTGAGATACGATGGTATCAGTCACATGGAAACTCTGCCATCATCTTCAATAGTGCTGAGAAACAATTCTAATGGGAGTGGGAGCTTTATCATGGCAAGTGATTTTCGTGTGGATTACATACCAGAAAAAAGTGGATTTTATGATATTAATGTATATTGTGGAAACATATTATTGAATGAGGGACATTCTTTCCGAAAAGAGGTAAAAGCAGGTGAAGTAAATGTTTCCTTGTCAAGTGTCACGAGGTTTTCTCCAAAGGTGCCAAAGCTGTCCAAAAGTGAAATAATTGTCCAGCTTGTGGATTCATATTTAAACCCTGTCCTCTCACAACAATCTAGGTTGAAATTGGAGATTGCTTCTGTCAATAGTTCTGGCTTTTCGACTTTGGACATTACAGACAATAAGGATGGATCATACAGCTGCAGTTACATGGCCAAAGATGTTGGCACTTACGAGATTTGTGCTTCCTTTGATGGCAAAAGTTTCTTATCATGTCCCTTGAGTATCAATGTGTACAGCAGTGAATATTTTCCAAAAGCCAACAATGATACAATATCTATTTGGGAGGACCAATCCGTTGCCTTTGATGTCTTAGCAAATGATTATTTTGCTGGTGATAATGCAAGTATAGTTGAATTCTCAAAAAATGGAAGGATCTTTCGTTACACTCCTTATAAAGGGTATTACGGAAATGATTTCTTTTGGTATACAATTTCTGATATAAATGGAAATCTTGCTTCTGCTTCCGTGTGCATATTTGTTCTGAATGTTCCACCTCAGTTTGTTTCTGCTCCAAATCAACTGCAAGCAACAGAAGATTCAATAAGCCCTAGATTTGGTGGTTTGACCGGGTTTGAGATAACTTATTCAAATCCTATGGAAAATATTTCTGTCAATCTTAGTGCTCAATCTGGAATTGTACTTCTGTCTCCTATGACTATGCAATTTGGGCAAGTAATGTGGAGTGAACTTACAGTTGACAAAGGAAATGAAACTGCAACCAGTTTAATAATAGAAGGCTCTGTGGAAGTAATTAATTTTGCGCTTCAGTCAATTCAGTATCTGGGAAATGAAAATTTTTATGGAGGAGATACCATTCAAGTCTCAACCAGGAATAAGAACGGAGTAAATTCACTGGATGTTCCAATTTTTGTTGATCCTATCAATGACCCTCCATTTATTAGAGCCCCCTACTTCATCATATTGAGGAGTAATGAAGATGAGACCCTTATCTTTGACCAAGAGAAAGATAAGTTTGACTTTTTCATTGGAGATCCTGATCTTCTTACCTTCCCTGGTATGGTTGAGCAATTGTTTTCTGTATATTTTAAACAATTCATGGTTCTCCATGTTTCTCTTGACATGATAATGTCAAAAGAAGGTGGTCAGCCTCACTTTTTTGTGACGTTCTCCATGGAAGTAAATGATGGATGGTTGGTGACAAACCTACCAGTTCATTTGATCAATACAACTGAATTGAAGCACGGTATTAATTATCAGTGGCAGCCTCTTCAGACATATGTTACTATCTCACAGCACTTTATGGTCAAAGCTCATGGAATCAGATTTCAGGCCACAGTCAATGACTGCAACAGTGTTATGCAGCAACTGTTCTATCATGGAGGTGAGCATGGAGCTGTTTTAACAATGACATTAAATGACATGGGAAACTACGGATGTTTTCCAGATTGTGCAGATGGCATGTCAATGCCATTATACACAGAAGCTACTAATTTCCTTGCGTTTCAAGCAATCGGCGAGAAGTTGAGAGTTAGGACAGTTTGTTTTGAGGTGTTGGAAATGAAAAGTGGGATGGCTGGGGTGAAACTGAAGTATTGGAAGAGTGTTTCTGATAGCACCGGAGCGCCCAAACAGGACGTTGAGCTACCATTTCCAATGGCTTGGGCGTTGAGCGCCAGCCCTTATTGCACCAATTTTGGAGAGATTAACTTTGTGAGTGGTAAGGGTGAAACCCAATTGCAAGGACTTTGCAAAGCAGTAGATGTCACCACAAGTGTAGGAATCAACATAGTTCGACATTAA 3282 0.39 MKQHFYIVEKNSWWDDRGTFQAGDTATIKVKVLENADKIDKKVFNPTLIVNGKEGNSSYVSTVLSDFEGDPNEWKIFFTPIRVGLFNVLISEERYKVDDSSLHFQVEPGNMYPSVCVASWKGVRHEYEAGSKATLMVLLKDAFGNGISKMTQVSYLPDFKLSVLHENGSVASAPDIFNMGWTEFDYIVIEFIVTKAGKFSLSLEGGNQTLKGSPLPLKLDLSLTQLPGAIDVSNCIAKWNVESHAWQLSSKMEIFIHQLDKYGNLVSGLYPFDSEVVETDTNLSIPISDLHFQEVDAGIQLFSFSNFEPGNFLLTIYDSKHNKSLSNMPYVYTVFIVGYCDGVKSVVNGSGLNDSVAGVKDEFSVYLNDIYQYPSPVQANILQVQISIENDSYRVMPVIYPILDSNGSRIASGLRYDGISHMETLPSSSIVLRNNSNGSGSFIMASDFRVDYIPEKSGFYDINVYCGNILLNEGHSFRKEVKAGEVNVSLSSVTRFSPKVPKLSKSEIIVQLVDSYLNPVLSQQSRLKLEIASVNSSGFSTLDITDNKDGSYSCSYMAKDVGTYEICASFDGKSFLSCPLSINVYSSEYFPKANNDTISIWEDQSVAFDVLANDYFAGDNASIVEFSKNGRIFRYTPYKGYYGNDFFWYTISDINGNLASASVCIFVLNVPPQFVSAPNQLQATEDSISPRFGGLTGFEITYSNPMENISVNLSAQSGIVLLSPMTMQFGQVMWSELTVDKGNETATSLIIEGSVEVINFALQSIQYLGNENFYGGDTIQVSTRNKNGVNSLDVPIFVDPINDPPFIRAPYFIILRSNEDETLIFDQEKDKFDFFIGDPDLLTFPGMVEQLFSVYFKQFMVLHVSLDMIMSKEGGQPHFFVTFSMEVNDGWLVTNLPVHLINTTELKHGINYQWQPLQTYVTISQHFMVKAHGIRFQATVNDCNSVMQQLFYHGGEHGAVLTMTLNDMGNYGCFPDCADGMSMPLYTEATNFLAFQAIGEKLRVRTVCFEVLEMKSGMAGVKLKYWKSVSDSTGAPKQDVELPFPMAWALSASPYCTNFGEINFVSGKGETQLQGLCKAVDVTTSVGINIVRH 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00173 1093 Pfam Bacterial Ig domain 581 656 - -
Vimu10g00173 1093 Gene3D Immunoglobulins 329 493 IPR013783 -
Vimu10g00173 1093 ProSiteProfiles Filamin/ABP280 repeat profile. 488 584 IPR017868 -
Vimu10g00173 1093 ProSiteProfiles Filamin/ABP280 repeat profile. 337 481 IPR017868 -
Vimu10g00173 1093 Gene3D Immunoglobulins 503 593 IPR013783 -
Vimu10g00173 1093 Gene3D - 594 664 - -
Vimu10g00173 1093 Pfam Filamin/ABP280 repeat 339 468 IPR017868 -
Vimu10g00173 1093 Pfam Filamin/ABP280 repeat 501 580 IPR017868 -
Vimu10g00173 1093 Gene3D Immunoglobulins 110 219 IPR013783 -
Vimu10g00173 1093 PANTHER JITTERBUG, ISOFORM N 446 704 IPR044801 GO:0030036|GO:0051015
Vimu10g00173 1093 SUPERFAMILY E set domains 506 587 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00173 Vimu-Chr10 1026542 1036316 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00173 - - gmx:100786794 1613.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00173 10 1026542 1036316 Vimu10g00173 10 1026542 1036316 ECH