Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00155 ATGAAATCTTTAAACCAAGAATTGATGTTTCTCATTCTTCAATATCTTGACGAGGAGAATTATAAAGACACTGTGCACAAGTTAGAACAAGAATCAGGATTGTTCTTCGATGTTAAGTATTTTGAAAAGAAAGTTTTGTCTGGAGAATGGGACGATGTTGAGAAATACCTATTTGGATTTACAAAAGTTGATGACAATCGATACTCCATCATGACATTCTTCGAGATTAGGAAGCAAAAATATCTAGAAGCTCTAGATAGACGAGACAGAGTGAGAGCTGTTGAAATTCTAGTGAATGATTTGAAAGTTTTTCAATCATTCAATGAATATTTGTTCAAAGAGATCACAAATCTTCTAACCCTAAATAATTTTAGGGAAAATGCACAATTATCAAAGTATGGTGACACTAAATCAGCTCGAAATATATTGGTAATAGAGCTTAAAAGATTGATTGAAGCAAATCCTATCTTTCAAGATAAACTCACATTTCCTTCAATTAAAACATCTCGGTTAAGAACCTTGGTTAATCAAAGTGTGAATTGGCAGCATCAGTTGTGCAAGAATCCAATGCCAAATCCAAACATTAAAACTTTATTCGTTAACCATTCTTGTTCACCTGCAAATGTTGGGCCATCTCATGTTAATACTTTAGTGGGATGGACATTGAATGAGATTCAGTCCACATCTTCCCAAATACCTGTAGGTGTTGCTTCCTCCTTGTCTGCTCCCACACATCAAGCCTCCAATGCTCTTGGAATGTTGGATTATCTACAAAATGATCAAGGACAACTAATGACACAAATGCGAACTACACAACGACGTGTAGAAGAGGCTACGTACAATGCTACATCGCAACAATTACAACAATTTGATGATCTTCCTAGAATTGTTGTTTGTACATTGCAACAAGGTTCAACAATTACAACAATGGATTTTCATCCTTCTCTTCATTCATTACTTGCTGTTGGTTGTGCAAATGGTGACATTTCACTTTGGGAAGCAGGGCATCAACAAAGAATTTTATCAAATCCTTTCAAAATATGGAATATTTCTATTTGCTCTGTCTTATTTCAGATTGATGCTCACGTTGGTGGTGTTAATGACTTAGCTTTTTCTAATTTGAACAAGCAGTTATGTATTATAACTTGTGGAGATGACAAGTTAATAAAGGTATGGGATTTGAACGGAAAAAGGCTTTTCAACTTCGAAGGTCATCAAGCACCTGTTTATTCTATCTGTCCTCATCAAAAGGAAAATATTCAGTTTATGTTTTCAACTTCTATTGATGGGAAAATCAAGGCATGGTTATATGATAACATCGGCTCTCGATTGGACTATGATGCTCCTGGACAGTGGTGCACCAGAATGCTCTATAGTACTGTCGAAAATAGACTGTTCTCTTGTGGGACAAGTAAAGATGGAGATTGTTTCCTAGTTGAGTGGAATGAAAGAGAAGGATCACCAAAGAGAAGATATTTTGGGTTTGGAAAGAAATGTAATGGAATTGTGCAATTTGATACAACAAAGGGTCGTTATTTGGCTGCTGGTGAAGATAATCAGATTAAGTTTTGGGATATGGATAATGTCAATGTTTTGTTTAGTACAGATGCTGAGGGAGGTCTTCCTAATCTCCCTCGTTTGAGATTCAATAAGGAAGGAAATTTGCTTGCTGTTACAACATCAGATGGTGGTTTCAAAGTCCTTTCTAATTCTGAGGGCATTAAATACTTTAGATCTCATCAAACACTTAAAGCTCCACTTGGAACAAAGAATGGGACTGATTCTATTCCTAGATGCATAGAGAGGAAAGGAAGTTTTGATTATGCATCGCACAAGTCTAAAGTTTGGGAAACAACAGAAATAATTGACCCCATTCAGTGTAGAACAATTACTCTCACAGATAGTGCAGATCCCACTAACAAGGTTGTTCGCCTTATTTACACAAATTCTGGAGTTAGTCTCATTGTTCTTGGCTCAAAAGGGATTCAGAGGCTGTGGAAATGGAGCCGGAATGAATTGAATCCAAATGGAAAGGCAACAGCAAGTGTTGTTCCACAACTTTGGGAACCAAATAATGGTACTGTGATGATTAACGATGTCCCAAACTCTTCTGAAGCAATATTTCCCTGCATGGCACTCTCAAAGAATGATTCCTATGTTATGTCTGCATGCGGAGGAAAAATTTCATTGTTCAACATGATGACTTTTAAGGTTATGACAACTTTTATGCCAGCTCCACCTATTCCGACCTGTCTGGCATTTCATCCTAAAGATAACAATATTGTTGCAATTGGGATGAATGATTCAACAGTTCACATTTATAATGTCAGGGTGAATGAGGTCAAATCTAAATTGAAAGGTCATCATCATGAGTGTATCACTGGTTTAGCTTTTTCAGCTCGACTCAATATATTGGTTTCATCTGGTGCTGATGCTCAGCTTTCTTTTTGGAGCATTGACTCGTGGCATAAGAAGAAATCAGTATCAATCCAAATGCCTAATGGAAATACACTTGTTGGTGATACTCAAGTGCAATTCAACAATGATCAATGGTTGATCGGTTCCCTATCATGTGCAACATATTCATGCAATAGCCAACTAGTTTATGCTGCTTTCCTTGATGGAAATATTGGAATGTTTGAAGGGAACACACTCAAGGTCAAATGTCGTATGGCTTCATCAGCATACCTACATCAACCCACAATAATAAGGCAAAATGTGTATCCTATAGTTGTTGCAGCTCATCCTGGTGAGCCTAATCAATTTGCAATTGGACTTTCTGATGGCTCAATTAAGGTTATTGAGCCTAGGGTGTGTGATAGCAAATGGGGAAATTATTAA 2841 0.3692 MKSLNQELMFLILQYLDEENYKDTVHKLEQESGLFFDVKYFEKKVLSGEWDDVEKYLFGFTKVDDNRYSIMTFFEIRKQKYLEALDRRDRVRAVEILVNDLKVFQSFNEYLFKEITNLLTLNNFRENAQLSKYGDTKSARNILVIELKRLIEANPIFQDKLTFPSIKTSRLRTLVNQSVNWQHQLCKNPMPNPNIKTLFVNHSCSPANVGPSHVNTLVGWTLNEIQSTSSQIPVGVASSLSAPTHQASNALGMLDYLQNDQGQLMTQMRTTQRRVEEATYNATSQQLQQFDDLPRIVVCTLQQGSTITTMDFHPSLHSLLAVGCANGDISLWEAGHQQRILSNPFKIWNISICSVLFQIDAHVGGVNDLAFSNLNKQLCIITCGDDKLIKVWDLNGKRLFNFEGHQAPVYSICPHQKENIQFMFSTSIDGKIKAWLYDNIGSRLDYDAPGQWCTRMLYSTVENRLFSCGTSKDGDCFLVEWNEREGSPKRRYFGFGKKCNGIVQFDTTKGRYLAAGEDNQIKFWDMDNVNVLFSTDAEGGLPNLPRLRFNKEGNLLAVTTSDGGFKVLSNSEGIKYFRSHQTLKAPLGTKNGTDSIPRCIERKGSFDYASHKSKVWETTEIIDPIQCRTITLTDSADPTNKVVRLIYTNSGVSLIVLGSKGIQRLWKWSRNELNPNGKATASVVPQLWEPNNGTVMINDVPNSSEAIFPCMALSKNDSYVMSACGGKISLFNMMTFKVMTTFMPAPPIPTCLAFHPKDNNIVAIGMNDSTVHIYNVRVNEVKSKLKGHHHECITGLAFSARLNILVSSGADAQLSFWSIDSWHKKKSVSIQMPNGNTLVGDTQVQFNNDQWLIGSLSCATYSCNSQLVYAAFLDGNIGMFEGNTLKVKCRMASSAYLHQPTIIRQNVYPIVVAAHPGEPNQFAIGLSDGSIKVIEPRVCDSKWGNY 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00155 946 Gene3D - 629 943 IPR015943 GO:0005515
Vimu10g00155 946 SMART WD40_4 735 775 IPR001680 GO:0005515
Vimu10g00155 946 SMART WD40_4 395 436 IPR001680 GO:0005515
Vimu10g00155 946 SMART WD40_4 899 935 IPR001680 GO:0005515
Vimu10g00155 946 SMART WD40_4 701 732 IPR001680 GO:0005515
Vimu10g00155 946 SMART WD40_4 778 818 IPR001680 GO:0005515
Vimu10g00155 946 SMART WD40_4 845 881 IPR001680 GO:0005515
Vimu10g00155 946 SMART WD40_4 352 393 IPR001680 GO:0005515
Vimu10g00155 946 SMART WD40_4 294 333 IPR001680 GO:0005515
Vimu10g00155 946 SMART WD40_4 485 525 IPR001680 GO:0005515
Vimu10g00155 946 SUPERFAMILY WD40 repeat-like 647 935 IPR036322 GO:0005515
Vimu10g00155 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 827 IPR001680 GO:0005515
Vimu10g00155 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 534 IPR001680 GO:0005515
Vimu10g00155 946 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Vimu10g00155 946 SMART Lish 4 36 IPR006594 GO:0005515
Vimu10g00155 946 Pfam WD domain, G-beta repeat 358 393 IPR001680 GO:0005515
Vimu10g00155 946 Pfam WD domain, G-beta repeat 783 818 IPR001680 GO:0005515
Vimu10g00155 946 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vimu10g00155 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 395 IPR001680 GO:0005515
Vimu10g00155 946 SMART ctlh 34 92 IPR006595 -
Vimu10g00155 946 ProSitePatterns Trp-Asp (WD) repeats signature. 380 394 IPR019775 -
Vimu10g00155 946 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 358 945 IPR027728 GO:0006355
Vimu10g00155 946 SUPERFAMILY WD40 repeat-like 286 573 IPR036322 GO:0005515
Vimu10g00155 946 Gene3D - 443 595 IPR015943 GO:0005515
Vimu10g00155 946 Gene3D - 279 439 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00155 Vimu-Chr10 880763 887822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00155 294 442 Miscellaneous Gene Families AT5G08390 29.444 4.26e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00155 - - vra:106760031 1859.73