Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00151 ATGTCACTCCCAATAACAGAGTTAAGGTTCTGTCTTTCCTTTTCCATTTCCAAGTTTTCTCCTTTTCTTCCAAACCCTTCTTCCTTCTCTTCCTTTCACTCACAGCCTCCTTCAGTTGATGTTCAGGACGTTGTCTCCCAATTTCATCGCATGTTTCATATGCGCCTTGTTCCTCCCATCAACCAATTTCAGCAGATTTTGGGATCTCTTGCAAAGATGGAACACTATTCTACAACTATTTCCCTTTTTAAGCAAATGGAGTTCAAGGGAATTCAGAGTAATCTTGTCATTCTCAACATCGTCATCAATTGTTTGTGCCACTTAAGCCAAATGTCATTATCTTTCTCTGTTCTTGCCAAGATTCTCAAACTGGGTTATCATCCGGATGTCATAACCTTAAATACTCTCATTAAAGGTTTCTGTCTTAACAGTGAGGTCAAGAAAGCAGTTACATTTTATGACAAGGTAGTAGCACAAGGATTTCGATTTACCGAAATTACTTACGGGACTTTGATAAATGGCTTTTGTAAGGTAGGAGAAACAGGAGCTGCCATCAAGTTGCTAGGAACAATAGAAGAAGGCGGATTATGTAACTCTACTGTGGTAATGTATGCTCCTATAATTGATTCTCTATTCAAAGATAATCTTGCAAAAGAGGCCTATGATTTAATTATTAAAATGAAATCAAATAACATAATGCCTAATGCTTATATCTATACTATAATGATAGATGCTTTATGTGTGATGGTGAAAGCTTATGTGAAACCTACTTGTGTTACACTTAACATTTTAATGGATTGGTATTGCTTGGCTAACAAGATGAAAAGTGCTAAACACATATTTAATTGTATGACTCAAATTGGAGTGACTCCTAACGTTTATAGCTATACTATCATGATTAATGGATTATGTAAGAGTGAAAGAGTGGATGAGGCCATAAATCTCTTTCAGGAAATGCATAAAAGTAACAAGTTTCCTAACCTATGGACTTACAATACTCTTATAGATGGTTTATGCAAATCTGGGAGAATAAGTTATGTTTGGGATCTTATTGATGAGATGCATAATAGAAATCTACAACCAAATGTAATGACATACAATTGCTTGATACATGCTTTGTGCAAAAATTATTGTCTAGACAAGGCATTTGAATTTTTCAAGACAATAATGGAAAAGGGAATTAAGCCTAATATGTATACCTGGAATATACTTATTGATGGAATGTGCAAAGGAGGAAGACTTGAAGAGGCACAAGAAACCTTTCAAGATCTTTTATTTAAAGGGTACCGTTTAAATGTCTATTGTCATAATACTATGATCAATGGGTTTTGTAAAAAGGGTTTAATTGATGAGGCATTAACCTTATGGTCCAAAATGGAAGACAATGGTTGTTTACCTGATGCAATAACTTTCGAAATAATGATCAGGGCTCTCTTTGAAAAGAATGAGATTGATAAAGGAGAGACATTTGTTCGTGAAATGATATTTAGAGGCTTTCTTTCTTGGTTTAGAGTAACTACAATTGGTAGTGAGAATCAGCATGCTCAATTGTGCGATTTGGAACGAACGAGAAAGAGAAAGATGAGAAAGGAAGACACGTGCGAGCGTATGGAGAACGCTCTGCGAGAGTGCCACCGTCGAATTCCGGCGGGTCCGAGTCGTGACTCGGCGTGTCGCCACCTTAACCAGGCGTTGGCCATGTGCCTTGTTTCGTCTGCGTGTCCCGAAGAATCGGAGGCGGTGCGCACCCTTTGCTCCACCGCCGGCACCGCTCTGAAGCGCCAGCATTGCCAACAGGCTCAGTTTTCTCTCTCCCTCTGCCTCTCTTCTCACCAACAATAG 1842 0.3849 MSLPITELRFCLSFSISKFSPFLPNPSSFSSFHSQPPSVDVQDVVSQFHRMFHMRLVPPINQFQQILGSLAKMEHYSTTISLFKQMEFKGIQSNLVILNIVINCLCHLSQMSLSFSVLAKILKLGYHPDVITLNTLIKGFCLNSEVKKAVTFYDKVVAQGFRFTEITYGTLINGFCKVGETGAAIKLLGTIEEGGLCNSTVVMYAPIIDSLFKDNLAKEAYDLIIKMKSNNIMPNAYIYTIMIDALCVMVKAYVKPTCVTLNILMDWYCLANKMKSAKHIFNCMTQIGVTPNVYSYTIMINGLCKSERVDEAINLFQEMHKSNKFPNLWTYNTLIDGLCKSGRISYVWDLIDEMHNRNLQPNVMTYNCLIHALCKNYCLDKAFEFFKTIMEKGIKPNMYTWNILIDGMCKGGRLEEAQETFQDLLFKGYRLNVYCHNTMINGFCKKGLIDEALTLWSKMEDNGCLPDAITFEIMIRALFEKNEIDKGETFVREMIFRGFLSWFRVTTIGSENQHAQLCDLERTRKRKMRKEDTCERMENALRECHRRIPAGPSRDSACRHLNQALAMCLVSSACPEESEAVRTLCSTAGTALKRQHCQQAQFSLSLCLSSHQQ 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vimu10g00151 613 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 249 434 - -
Vimu10g00151 613 Gene3D Tetratricopeptide repeat domain 39 179 IPR011990 GO:0005515
Vimu10g00151 613 Gene3D Tetratricopeptide repeat domain 180 250 IPR011990 GO:0005515
Vimu10g00151 613 Gene3D Tetratricopeptide repeat domain 251 344 IPR011990 GO:0005515
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vimu10g00151 613 Pfam PPR repeat 392 422 IPR002885 -
Vimu10g00151 613 Gene3D Tetratricopeptide repeat domain 349 425 IPR011990 GO:0005515
Vimu10g00151 613 Gene3D Tetratricopeptide repeat domain 426 495 IPR011990 GO:0005515
Vimu10g00151 613 Pfam PPR repeat family 200 247 IPR002885 -
Vimu10g00151 613 Pfam PPR repeat family 326 375 IPR002885 -
Vimu10g00151 613 Pfam PPR repeat family 128 177 IPR002885 -
Vimu10g00151 613 Pfam PPR repeat family 432 478 IPR002885 -
Vimu10g00151 613 Pfam PPR repeat family 256 305 IPR002885 -
Vimu10g00151 613 NCBIfam pentatricopeptide repeat 131 162 IPR002885 -
Vimu10g00151 613 NCBIfam pentatricopeptide repeat 399 432 IPR002885 -
Vimu10g00151 613 NCBIfam pentatricopeptide repeat 434 468 IPR002885 -
Vimu10g00151 613 NCBIfam pentatricopeptide repeat 166 196 IPR002885 -
Vimu10g00151 613 NCBIfam pentatricopeptide repeat 330 363 IPR002885 -
Vimu10g00151 613 NCBIfam pentatricopeptide repeat 294 327 IPR002885 -
Vimu10g00151 613 NCBIfam pentatricopeptide repeat 469 499 IPR002885 -
Vimu10g00151 613 NCBIfam pentatricopeptide repeat 365 397 IPR002885 -
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vimu10g00151 613 Coils Coil 520 547 - -
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Vimu10g00151 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00151 Vimu-Chr10 858356 863101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00151 331 500 Glycosyltransferase AT1G05670 27.907 2.51e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00151 - - var:108322243 810.446