Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00146 ATGTCCAATGCAGGCCACCCTAGCCGGCAGCCACCACTGGTATATAAAGACTTCCCTTTCCACATATCAGCAACAACACCAACATCTTCTCACTATAACCACATCACTGTCATGGGTGTATTTCCTCAGGTTTATGATACCCCTGCTGCTGTGCCTCCCGCTAGGCTTTTCAAAGCCATGACCTTGGATTTCCATAACCTCTTCCCAAAGCTTGTGGATAGCATCCACAGTATTGAATTCACCCAAGGAAATGGTGCTCCTGGCACCATCAAGAAGATCACCACCATTGAAGCAGGTGAAGAAAGCAAGTACGTGCTGCACAGAGTTGATGCAATCGATGAGGGTAGCTTTATGTACAACTTCAGCATAATTGATGGCAGTGGGTTGCCTGAGACATTGGAGAAGATCTCATTCGAGAGCCAACTGGTAGAAGGCTCCAATGGAGGAACAATTAGGAAGGTGCATGCCAAATATTTCACAAAAGGTGAAGCTGTTCTTACTGAGGAGGAACTGAAGGCTAACCAAGCCAAGATCCAAGGACTTGTGAAGCTCGTTGAAGGCTATCTTCTGGCAAATCCTCATTACTGA 588 0.4643 MSNAGHPSRQPPLVYKDFPFHISATTPTSSHYNHITVMGVFPQVYDTPAAVPPARLFKAMTLDFHNLFPKLVDSIHSIEFTQGNGAPGTIKKITTIEAGEESKYVLHRVDAIDEGSFMYNFSIIDGSGLPETLEKISFESQLVEGSNGGTIRKVHAKYFTKGEAVLTEEELKANQAKIQGLVKLVEGYLLANPHY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00146 195 PRINTS Major pollen allergen Bet V1 signature 86 95 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00146 195 PRINTS Major pollen allergen Bet V1 signature 103 122 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00146 195 PRINTS Major pollen allergen Bet V1 signature 63 73 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00146 195 PRINTS Major pollen allergen Bet V1 signature 40 60 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00146 195 PRINTS Major pollen allergen Bet V1 signature 122 135 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00146 195 PRINTS Major pollen allergen Bet V1 signature 147 163 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00146 195 PRINTS Major pollen allergen Bet V1 signature 181 191 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00146 195 PANTHER - 45 193 - -
Vimu10g00146 195 Gene3D - 39 195 IPR023393 -
Vimu10g00146 195 CDD Bet_v1-like 50 189 - -
Vimu10g00146 195 FunFam Major pollen allergen Bet v 1-A 38 195 - -
Vimu10g00146 195 SUPERFAMILY Bet v1-like 41 195 - -
Vimu10g00146 195 Pfam Pathogenesis-related protein Bet v 1 family 43 192 IPR000916 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00146 Vimu-Chr10 842579 843299 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00146 - - pvu:PHAVU_009G252800g 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00146 10 842579 843299 Vimu10g00146 10 842579 843299 ECH
Vimu10g00146 10 842579 843299 Vimu7g01751 7 16151389 16158334 PCT