Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00128 ATGCATGGACCTACTGCCGAAAAACAAATGTACCTAATTAATCATTCATGGATATATGTGCAGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCCAATGTCAACATTTTTCGCGACCCACGGTGGGGCCGCGGCCAAGAGACTCCCGGCGAAGACCCAACCCTCGCCGCAAAATACGCCGCCAGCTATGTCCAAGGACTCCAAGGCGACGGCGCCGGAAACCGCCTCAAGGTCGCTGCTTGTTGTAAACACTACACTGCCTATGACCTTGACAACTGGAATGGCGTAGACAGGTTTCATTTCAATGCCAAGGTAAGCAAACAGGATCTGGAGGACACTTACGACGTGCCATTTAAAGCCTGCGTGTTGGAAGGACAAGTGGCGAGTGTGATGTGTTCTTACAATCAGGTGAATGGGAAGCCCACGTGTGCTGACCCTGATCTCCTTCGCAACACTATACGTGGACAATGGCGGCTCAATGGGTACATAGTCTCGGACTGTGACTCGGTTGGAGTTTTCTACAACCACCAACACTACACAAGAACACCCGAGGAGGCGGCAGCGGAGGCCATAAAAGCGGGCCTGGACTTGGACTGTGGCCCATTCTTGGCGATCCACACCGATGCTGCCATTAGGAAGGGACTCATTTCCGAAAACGATCTTAACCTTGCCTTGGCCAACCTTATCACGGTCCAAATGAGATTGGGCATGTTCGACGGTGAACCCTCGGCCCAACCATACGGAAACTTGGGCCCAAGAGACGTGTGCACCCCGGCCCATCAGCAGCTGGCCCTTCAAGCGGCCAGAGAGAGCATAGTATTGTTACAAAACAAAAGAAACTCCTTACCACTATCTCCGGCGCGAATCCGCACCGTAGGAGTCATTGGACCCAATTCGGACGCCACCGTTACAATGATAGGGAACTATGCCGGTGTGGCGTGTGGTTATACCAGTCCTTTGCAAGGGATTGCCAGGTATGTGAAGACTTCTCATCAAGTTGGATGCAGGAATGTGGCTTGTATGGGAAACGAACTATTTGGAGCAGCAGAGATCGTAGCTAAGCAAGTTGACGCCACTGTGCTGGTAATGGGCCTTGACCAGTCCATAGAAGCAGAAACCAGAGATAGACTTGGGCTTCTCTTACCAGGCCTTCAACAAGAGCTCGTTGCAAGGGTGGCTAGGGCCGCCAGAGGCCCAGTCATCTTGGTTATCATGTCCGGTGGCCCAGTTGATGTCACGTTTGCGGTAAATGACCCAAAGATCAGTGCCATTTTGTGGGTTGGTTATCCTGGTCAAGCCGGGGGAACTGCCATAGCTGACGTTATATTTGGTCAAACTAACCCAGGAGGAAGATTGCCCATGACATGGTACCCGGAAAACTATTTGGCTAAAGTACCGATGACAGTCATGGACATGCGTCCAAACTCAGCAACAGGGTACCCAGGAAGAACCTACAGATTCTACAAAGGACCTGTGGTGTTTCCATTCGGACATGGGTTGAGTTACTCGAGATTCAGCCACAGCTTAGCCATTGCTCCAAAAGAGGTGTCAGTGTCAGTGCCCTTAGCCTTGACAAACTCAACCCTTTCAAGCGAAGCAGTGAGGGTGAGCCACGCCAGTTGTGATGATACATTGGAGATGGAATTCCACGTGGACGTGAAAAACGAAGGCTCCATGGATGGCACCCACACCCTTCTTGTATTCTCGAAACCACCACCTGGAAAATGGTCTCAGATCAAACAACTGGTGAACTTTCAGAAGACCCATGTTCCTGCTGGGTCGAAGCAGCGTCTGAAGGTTGCTGTTCATGTCTGCAAACATCTGTCCGTCGTGGACCAGTTCGGGATTCGAAGAATCCCATCTGGTGAACATGAACTCCACATTGGTGATATCAAACATTCTATTTCTGTCCAAACCGTGCAACAAATCAAGAACTGA 1971 0.5084 MHGPTAEKQMYLINHSWIYVQVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVQGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWRLNGYIVSDCDSVGVFYNHQHYTRTPEEAAAEAIKAGLDLDCGPFLAIHTDAAIRKGLISENDLNLALANLITVQMRLGMFDGEPSAQPYGNLGPRDVCTPAHQQLALQAARESIVLLQNKRNSLPLSPARIRTVGVIGPNSDATVTMIGNYAGVACGYTSPLQGIARYVKTSHQVGCRNVACMGNELFGAAEIVAKQVDATVLVMGLDQSIEAETRDRLGLLLPGLQQELVARVARAARGPVILVIMSGGPVDVTFAVNDPKISAILWVGYPGQAGGTAIADVIFGQTNPGGRLPMTWYPENYLAKVPMTVMDMRPNSATGYPGRTYRFYKGPVVFPFGHGLSYSRFSHSLAIAPKEVSVSVPLALTNSTLSSEAVRVSHASCDDTLEMEFHVDVKNEGSMDGTHTLLVFSKPPPGKWSQIKQLVNFQKTHVPAGSKQRLKVAVHVCKHLSVVDQFGIRRIPSGEHELHIGDIKHSISVQTVQQIKN 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00128 656 Pfam Glycosyl hydrolase family 3 N terminal domain 40 213 IPR001764 GO:0004553|GO:0005975
Vimu10g00128 656 Gene3D - 269 514 IPR036881 GO:0004553|GO:0005975
Vimu10g00128 656 Gene3D Immunoglobulins 535 655 IPR013783 -
Vimu10g00128 656 Gene3D - 16 257 IPR036962 GO:0004553|GO:0005975
Vimu10g00128 656 FunFam Auxin-induced beta-glucosidase 10 257 - -
Vimu10g00128 656 Pfam Glycosyl hydrolase family 3 C-terminal domain 283 513 IPR002772 GO:0004553|GO:0005975
Vimu10g00128 656 FunFam probable beta-D-xylosidase 2 268 514 - -
Vimu10g00128 656 SUPERFAMILY (Trans)glycosidases 21 282 IPR017853 -
Vimu10g00128 656 PRINTS Glycosyl hydrolase family 3 signature 52 68 IPR001764 GO:0004553|GO:0005975
Vimu10g00128 656 PRINTS Glycosyl hydrolase family 3 signature 163 181 IPR001764 GO:0004553|GO:0005975
Vimu10g00128 656 PRINTS Glycosyl hydrolase family 3 signature 89 105 IPR001764 GO:0004553|GO:0005975
Vimu10g00128 656 Pfam Fibronectin type III-like domain 577 641 IPR026891 -
Vimu10g00128 656 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 283 516 IPR036881 GO:0004553|GO:0005975
Vimu10g00128 656 SMART Fn3_like_2 574 643 IPR026891 -
Vimu10g00128 656 PANTHER SUGAR HYDROLASE-RELATED 21 646 IPR044993 GO:0009044|GO:0045493
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00128 Vimu-Chr10 737492 743507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00128 21 649 Glycoside Hydrolase AT5G49360 72.642 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00128 - - gmx:100812823 1165.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00128 10 737492 743507 Vimu10g00128 10 737492 743507 ECH