Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00127 ATGAAGAACTACAACTATGGAAAAGCTGGGGAAGCCTTGAAGGTGGATCTGTTGAACCATCCAGAATACATAGAACAAAATGCAACCCTAGCCTTCCAAGCCGCACTGTGGCAGTGGATGAGCCCACCTGAGAAGCACCTACCTTCACCCCATGATGTGTTTGTTGGGAATTGGAAACCCACCAAGAACGACACATTGTCCAAAAGGGTACCTGGATTTGGTGCCACTATAAATTTGCTCTATGGGGACCAAACTTGTGGGCAGGGACCTGATAATGAGGCCATGAACAACATCATTTCTCATTATCTTTATTACCTTGATCTTATGGGTGTTGGCAGAGAAGAAGCTGGGCCTAATGAAGTTCTCTCCTGTGCTGAACAAAAGGCTTTTAAGCCCTCTGGTTCACCATCTTCTGCCACAAATTGA 426 0.4577 MKNYNYGKAGEALKVDLLNHPEYIEQNATLAFQAALWQWMSPPEKHLPSPHDVFVGNWKPTKNDTLSKRVPGFGATINLLYGDQTCGQGPDNEAMNNIISHYLYYLDLMGVGREEAGPNEVLSCAEQKAFKPSGSPSSATN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00127 141 SUPERFAMILY Lysozyme-like 3 131 IPR023346 -
Vimu10g00127 141 Gene3D - 27 130 - -
Vimu10g00127 141 Pfam Chitinase class I 2 114 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu10g00127 141 Gene3D Endochitinase, domain 2 2 26 - -
Vimu10g00127 141 PANTHER CHITINASE-RELATED 3 128 - -
Vimu10g00127 141 CDD chitinase_GH19 3 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00127 Vimu-Chr10 723489 724204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00127 3 130 Glycoside Hydrolase AT3G16920 78.125 1.77e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00127 - - vra:106760177 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00127 10 723489 724204 Vimu10g00127 10 723489 724204 ECH