Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00124 ATGCTGAACCTGGATCAGTCATTGCTCAGGTTCATTCGTCTCTTCACCCCACTGGGTGTGGAGGAGGAAGGATTGCAGGTCTATGTTGGGTACTTGAAGAAGGTGATTGCAATGAGGTCAAAAATGGAGTTTGAGCAGTTGGTGGAGACGATGGATCAGCGAAATGTCAATTTTGTTGGTTGTTTGACCAATTTGTTTAAGGACATTGTATTGGCAATTGAGGAGAATAGTGAGATCTTGAGTGGTCTTTGTGGTGAGGATGGTATTGTATATGCCATCTGTGAGCTTCAGGAGGAGTGTGATTCTCGTGGTTCTGCGATTTTGAACAAGTATATGGAGTATAGGAAGTTGGCCAAGTTGTCCTCTGAGATAAATGCACACAACACCAGTTTGCTTGCTGTTGGAGGAGGTCCTGAGGGTCCTGACCCACGAGAGGTTGAGTTATATTTGGAGGAGATTCTCTCCCTTATGCAGCTTGGTGAGGATTACACCGAATTCATGATTTCAAAGATCAAAGGGCTTACTTCTATTGATCCCGAGTTGCTTCCTCGTGCCACCAAGGCTTTCCGGAGTGGCAGTTTCAGCAAGGTTGCACAAGATTTAACCGGTTTTTATGTCATTTTGGAGGGATTTTTCATGTTGGAGAATGTCAGGAAAGCAATAAGGATCGATGAACAAGTGCCTGACAGCCTTACCACTTCCATGGTGGATGATGTGTTTTATGTATTGCAGAGTTGCCTGCGGAGGGCAATATCCACTTCCAATATCAGTTCTGTTGTTGCCGTTTTGAGTGGTGCCAGCAGTTTGCTCGGCAATGAATACCATGAAGCCTTGCAGCAAAAAATAAGAGAGACAAACCTGGGTGCAAAGTTGTTCTTTGGTGGTGTTGGTGTGCAAAAGACAGGTACAGAAATTGCAACAGCTTTGAATAATATGGATGTTAGCAGTGAGTATGTTCTGAAGCTAAAACATGAAATTGAAGAACAGTGTGCTGAGGTGTTTCCTGCACCAGCTGATCGAGAAAAGGTAAAATCTTGTTTGACTGAGCTGGCAGATAGTAGCAATGCTTTCAAGCAAGCTTTGACTGCTGGCATAGAACAACTTGTGTCAACCATTGCACCTCGATTAAGACCAGTATTAGACAGCGTTGGAACAATTAGCTATGAGCTTTCAGAAGCTGAGTATGCAGATAATGAGGTGAATGACCCATGGGTTCAGAGACTTCTCCATTCTGTTGAGACAAATGTGGCTTGGCTGCAGCCACTAATGACTTCTGACAATTATGATACTTTTGTTCATTTAATTGTTGACTTCATTGTGAAAAGGCTAGAAGTTATTATGATGCAGAAAAGATTTAGTCAGCTAGGCGGTCTTCAGCTTGACAGAGATGCCAGAGCTTTGGTAAGTCACTTCAGTGTCATGACACAGAGAACTGTCAGAGACAAGTTTGCACGTCTTACTCAAATGGCAACAATTCTAAATTTAGAAAAGGTTTCTGAGATTCTAGATTTCTGGGGTGAGAACTCTGGACCTATGACCTGGAGATTAACCCCAGCAGAAGTTAGGCGTGTATTGGGTCTGCGGGTTGATTTTAAACCAGAAGCAATAGCTGCTGTGAAGTTGTAA 1626 0.4323 MLNLDQSLLRFIRLFTPLGVEEEGLQVYVGYLKKVIAMRSKMEFEQLVETMDQRNVNFVGCLTNLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSAILNKYMEYRKLAKLSSEINAHNTSLLAVGGGPEGPDPREVELYLEEILSLMQLGEDYTEFMISKIKGLTSIDPELLPRATKAFRSGSFSKVAQDLTGFYVILEGFFMLENVRKAIRIDEQVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVVAVLSGASSLLGNEYHEALQQKIRETNLGAKLFFGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPAPADREKVKSCLTELADSSNAFKQALTAGIEQLVSTIAPRLRPVLDSVGTISYELSEAEYADNEVNDPWVQRLLHSVETNVAWLQPLMTSDNYDTFVHLIVDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFSVMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIAAVKL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00124 541 SMART cog4.2seq4 1 283 IPR013167 -
Vimu10g00124 541 Pfam COG4 transport protein 6 281 IPR013167 -
Vimu10g00124 541 Pfam RINT-1 / TIP-1 family 404 498 IPR007528 GO:0006888|GO:0006890|GO:0070939
Vimu10g00124 541 Gene3D - 295 372 - -
Vimu10g00124 541 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 6 541 - -
Vimu10g00124 541 Gene3D - 373 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00124 Vimu-Chr10 690586 693084 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00124 K20291 - gmx:100778820 989.949