Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00120 ATGCAATCATCCATTTCTCTCTCTTCTTCATACGCTTCCACCGTTTCGGGGCCACGTCACTCTTTTTCTCTTTGCGGTGGCAGCCTCGTCCCTTCGACTCTCCGCTTCTGTGGTCTCCGCCGCCAGGCATTCACTTCAAGTTCCATCAATCACCACTGCCGCCGGCGTCTGCAGCACTCCGCCGCAGTGACCGCCGCGCTTTCGAACAATGGTACCGGTCCCACATTGTTCGACTACGACTTGCTCATAATTGGCGCCGGCGTCGGTGGACATGGCGCCGCGCTTCACGCTGTTGAGAAGGGCCTGAAAACGGCCATTGTTGAGGGAGATGTGGTTGGAGGGACGTGTGTGAATAGGGGCTGTGTTCCTTCTAAGGCACTTTTGGCTGTGAGCGGTCGTATGCGAGAGCTGCGGGATGATCATCACTTGAAGTCGCTGGGTTTGCAGGTTTCTGGTGCTGGGTATGACAGACAAGCAGTTGCTGACCATGCTAATAATCTCGCTTCGAAAATCCGTGGCAACTTGACCAACTCTTTAAAAGCTCTTGGAGTAGATATTCTCACTGGTTTTGGAACCATTTTGGGTCCTCAAAAGGTGAAAGTTGGCTCTTCCAACAAAGTGGTAACTGCAAAAGACATCATTATTGCTACTGGGTCGGTTCCTTTTGTTCCTAAGGGCATTGAAGTTGATGGGAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGACTGTTCCAGATTGGGTTGCAATTGTAGGAAGTGGCTATATCGGTCTTGAATTTAGTGATGTTTATACAGCTCTTGGAAGTGAGGTTACTTTTATTGAAGCTTTAGATCAGCTCATGCCAGGATTTGATCCTGAAATTAGCAAGTTGGCTCAAAGGGTTCTCATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCATCAAAGATCACTCCTGCAAGAGATGGAAAACCTGTCACGATTGAGCTCATTGATGCAAAGACCAAGGAACAAAAGGACACTTTAGAGGTGGATGCTGCGCTAATAGCAACTGGAAGGGCTCCTTTCACACAAGGTCTTGGATTGGAGAATATTGATGTTGTAACTCAGCGTGGTTTTGTTCCTGTGGATGAGCGCATGCGAGTACTTGATGCAAATGGAAACCTGGTTCCTCATTTGTATTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCGCAAGGAATTTCAGTGGTTGAACAAGTCACTGGAAGAGATCATGTGCTCAATCATTTAACCATACCAGCTGCTTGTTTTACTCATCCTGAAATCAGCATGGTTGGATTGACCGAGCCTCAAGCAAGGGAGAAAGGAGAAAAGGAAGGTTTTGAAATAAGCGTTGCCAAAACAAGTTTTAAAGCTAACACAAAGGCCTTAGCTGAAAATGAAGGGGAGGGTCTTGCAAAGTTGATATACAGGCCTGACACTGGAGAGATACTGGGAGTTCATATTTTCGGGTTGCATGCTGCTGATCTCATCCACGAGGCGTCCAATGCAATAGCCTTAGGAACACGTATTCAGGATATAAAATTTGCCGTTCATGCTCATCCGACTTTGTCTGAGGTGCTTGATGAGCTGTTTAAATCAGCAAAGGTTAAAGCACAAGCTTCTGCACCAGTAAAGGAAGCAGTTGCAGTTTAA 1689 0.4677 MQSSISLSSSYASTVSGPRHSFSLCGGSLVPSTLRFCGLRRQAFTSSSINHHCRRRLQHSAAVTAALSNNGTGPTLFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELRDDHHLKSLGLQVSGAGYDRQAVADHANNLASKIRGNLTNSLKALGVDILTGFGTILGPQKVKVGSSNKVVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLETVPDWVAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFASKITPARDGKPVTIELIDAKTKEQKDTLEVDAALIATGRAPFTQGLGLENIDVVTQRGFVPVDERMRVLDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLTIPAACFTHPEISMVGLTEPQAREKGEKEGFEISVAKTSFKANTKALAENEGEGLAKLIYRPDTGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVKAQASAPVKEAVAV 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00120 562 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 430 541 IPR004099 -
Vimu10g00120 562 FunFam Putative dihydrolipoyl dehydrogenase 222 349 - -
Vimu10g00120 562 SUPERFAMILY FAD/NAD(P)-binding domain 72 420 IPR036188 -
Vimu10g00120 562 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 429 543 IPR016156 GO:0016491|GO:0050660
Vimu10g00120 562 PANTHER DISULFIDE OXIDOREDUCTASE 77 546 - -
Vimu10g00120 562 Pfam Pyridine nucleotide-disulphide oxidoreductase 79 411 IPR023753 GO:0016491
Vimu10g00120 562 Gene3D - 79 412 IPR036188 -
Vimu10g00120 562 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 113 123 IPR012999 GO:0016668
Vimu10g00120 562 PRINTS FAD-dependent pyridine nucleotide reductase signature 210 228 - -
Vimu10g00120 562 PRINTS FAD-dependent pyridine nucleotide reductase signature 249 267 - -
Vimu10g00120 562 PRINTS FAD-dependent pyridine nucleotide reductase signature 81 100 - -
Vimu10g00120 562 PRINTS FAD-dependent pyridine nucleotide reductase signature 376 398 - -
Vimu10g00120 562 PRINTS FAD-dependent pyridine nucleotide reductase signature 342 358 - -
Vimu10g00120 562 Gene3D - 222 349 IPR036188 -
Vimu10g00120 562 FunFam Dihydrolipoyl dehydrogenase 429 553 - -
Vimu10g00120 562 PIRSF Hg-II_reductase_MerA 46 545 IPR001100 GO:0016491
Vimu10g00120 562 Gene3D - 429 553 IPR016156 GO:0016491|GO:0050660
Vimu10g00120 562 PRINTS Pyridine nucleotide disulphide reductase class-I signature 213 222 - -
Vimu10g00120 562 PRINTS Pyridine nucleotide disulphide reductase class-I signature 112 127 - -
Vimu10g00120 562 PRINTS Pyridine nucleotide disulphide reductase class-I signature 517 537 - -
Vimu10g00120 562 PRINTS Pyridine nucleotide disulphide reductase class-I signature 249 274 - -
Vimu10g00120 562 PRINTS Pyridine nucleotide disulphide reductase class-I signature 495 510 - -
Vimu10g00120 562 PRINTS Pyridine nucleotide disulphide reductase class-I signature 80 102 - -
Vimu10g00120 562 PRINTS Pyridine nucleotide disulphide reductase class-I signature 343 357 - -
Vimu10g00120 562 PRINTS Pyridine nucleotide disulphide reductase class-I signature 426 447 - -
Vimu10g00120 562 PRINTS Pyridine nucleotide disulphide reductase class-I signature 391 398 - -
Vimu10g00120 562 NCBIfam dihydrolipoyl dehydrogenase 79 549 IPR006258 GO:0004148|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00120 Vimu-Chr10 676746 681762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00120 1 559 Acyl Lipid Metabolism Gene Families AT3G16950 80.986 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00120 K00382 - gmx:100803176 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00120 10 676746 681762 Vimu10g00120 10 676746 681762 ECH
Vimu7g01732 7 15964691 15971742 Vimu10g00120 10 676746 681762 PCT