Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00109 ATGCTACATAACAGAGACAGAGGCGTGAGAGGGAAATTAGAAAGAGCAAAGAAAAGGAGCGAAGAAGAGCATCGAGTAGGATTCTTCATCGTTGCCAAGATGAGTACTATGAAATTTTGCCGTGAATGTAACAACATTCTCTACCCTAAAGAAGACAGAGATCAAAAGATTCTTCTCTACGCTTGCCGCAACTGCGACCATCAGGAGGTTGCGGATAACTTCTGTGTATACAGGAATGAGATACATCATTCTGTTGGAGAGCGCACTCAAGTGTTACAGGATGTAGCTGCAGATCCAACGCTTCCTCGGACCAAGTCTGTTCGCTGCACTCAATGCAATCATGGTGAAGCTGTCTTTTTCCAGGTAAATTCCTGTTCTTATGCTTGA 387 0.4393 MLHNRDRGVRGKLERAKKRSEEEHRVGFFIVAKMSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQDVAADPTLPRTKSVRCTQCNHGEAVFFQVNSCSYA 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00109 128 Gene3D - 80 127 - -
Vimu10g00109 128 Pfam RNA polymerases M/15 Kd subunit 37 72 IPR001529 GO:0006351
Vimu10g00109 128 FunFam DNA-directed RNA polymerase II subunit RPB9 34 79 - -
Vimu10g00109 128 SMART rpol9cneu 38 91 IPR001529 GO:0006351
Vimu10g00109 128 SUPERFAMILY Zinc beta-ribbon 84 123 - -
Vimu10g00109 128 PANTHER DNA-DIRECTED RNA POLYMERASE 34 123 IPR012164 GO:0003899|GO:0006351
Vimu10g00109 128 SUPERFAMILY Zinc beta-ribbon 34 81 - -
Vimu10g00109 128 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 39 65 IPR019761 -
Vimu10g00109 128 Gene3D - 34 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00109 Vimu-Chr10 622380 623180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00109 K03017 - mnt:112091205 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00109 10 622380 623180 Vimu10g00109 10 622380 623180 ECH
Vimu7g01727 7 15922826 15925952 Vimu10g00109 10 622380 623180 PCT