Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00108 ATGATTAGTATTTTATTTGTTCCTCTGGCGCTTTACAGGAATATGGCTTTGCAGAAGTATGCTCCTTCTGGTCATGCACCTCCCATTAATATGAAACATTTGACCTTTTCCAGTAAGATGCCTAAGAAAGCTGAGCATGACACGGCATGTCAGAATCATAACATGGATGTGGATATTGACCTGAGGGAAGTTTATTTTCTCATTATGCACTTTCTTTCAGCTGGGCCATGTCATAAAACTTCTTTACAATTTTGGAATGAGCTTCTTGAGCATGAACTTTTGCCTAGAAGGTATCATGCGTGGTATTCAAAGACTGGAGCATGTAGTGGAGACAAAGATGATGATGGTCTATCATTCCCTTTAAATTACAATATGTTAATGGAGAGGTATCCTCATATTGAAAAGGATCACCTGGTAAAGCTTTTAAAGCAATTGTTATTAAGTACAACCATTCCATCACTGGGTATGAATCTTGGAAATGCCCCAAATGCGGCTGATGTACCTACACTTTTAGGAAGTGGTTCATTTTCACTGCTGAGCTATGATAGGGATAAAATGAAAGAAGTCAAACGGCCACCTCCTCACATGCGCTGGCCTCATATGAAAGCCAATCAAGTTCATGGGCTTAATTTGAGGGAAATCGGGGGTGGTTTCCCAAGACATCACCGTGCACCATCTATACGTTCTGCATGCTATGCCATTGCAAAACCTTCTACCATGGTGCAAAAAATGAAAAATATCAAGAGGTTAAGAGGACACCGCAATGCTGTTTATTGTGCTATATTTGATCGGTCTGGAAGGTATGTGATTACTGGTTCAGATGACCGACTTGTAAAGGTTTGGTCAATGGAAACTGCATATTGTTTGGCCAGTTGCCGTGGACATGATGGTGACATCACTGATTTGGCTGTGAGTTCAAACAATGCTTTAGTTGCATCCTCGTCAAATGACTGTGTCATTCGAGTTTGGCGCTTGCCAGATGGCTTGCCAATATCAGTATTGCGGGGACATACTGGAGCTGTTACAGCCATAGCATTTAGTCCCAGACCAAATGCTGTATACCAGCTTTTATCTTCCTCTGATGATGGAACTTGTAGGATATGGGATGCAAGGTATACCCAATCAAGTCCAAGATTATATATTCCAAGGCCTTCAGATTCTGTAATTGGGAAGAGCAGTGGCCCATCTTCAAGTACTGTACCACAGAGCCATCAGATTTTTTGCTGTGCATATAATGCTAATGGAACTGTCTTTGTAACTGGTAGCTCTGACAATCTTGCTAGGGTTTGGAATGCTTGTAAACTTAGCACAGATGATAGTGACCAACCAAATCATGAGATAGACGTGCTATCTGGCCATGAGAATGATGTGAATTATGTGCAATTCAGTGGTTGTGCTGTTGCATCCCGGTTTTGCACAACAGAAACTTGGAAGGAGGAAAATATTCCCAAATTTAAAAATTCCTGGTTGAATCATGATAACATAGTTACCTGCTCTCGTGATGGAAGTGCTATAATATGGATTCCTAGATCTCGTAGATCACATGGAAAAAGTGGTCGCTGGACACGGGCATATCATCTAAGAGTTCCACCTCCACCTATGCCTCCTCAACCTCATAGAGGTGGTCCTCGTCAGAGAATTCTACCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTTGACAACCGCTTTGTTCTTGCAGCTATTATGGGGATGTGGCTGAGTGCTTCTTCACTCAAAGCATTTTCACCAAAATCTAGTCTTCAACTTGATTGCAGAATTTGTGTTTGGAATGCATCTGACGGAAGCTTAGTACACTCATTGACTGGGCATACTGAATCTACATATGTTCTGGATGTTCATCCTTTCAATCCCCGAATAGCTATGAGTGCTGGATATGATGGAAGAACTATTGTTTGGGACATATGGGAGGGCATGCCTATCCAGATATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAATTTTCTCCAGATGGGACATCAATTATACTTTCGGATGATGTTGGTCAACTATATATATTAAGCACAGGTCAAGGCGAGTCCCAAAAAGATGCGAAATATGATCAGTTCTTTCTTGGTGATTATCGACCTCTGATTCAAGACACCCACGGGAATGTACTAGACCAGGAAACTCAAATTGTCCCGTATCGACGGAATGTGCAAGATTTGCTTTGTGATTCAGCAATGATACCATACCCTGAACCTTATCAGAGTGAATTTCAGCAAAGAAGATTAGGAGCATTAGGCCTTGAATGGCGTCCATCATCGCTAAGGCTTGCTGTTGGTCCTGATTTCAATCTGGACCCTGATTATCACATGCTTCCATTGGCAGACCTGGATTTGGTTACAGAACCACTGCCTGAGTTTATAGATGTTATGGAATGGGAACCTGAAGTTGAGGTGTTTAGCGATGATGCAGATTCAGAATATAACGTCACTGAAGATTGCTCTTCTAAGGGTGAGAAAGGATGTTCAAGCTCCAATGCTTCTGGTGATTCAGGGTGCAGCACAGACAACAGCGAAGGGGAAGACAATCACATGGAAAGCATCCGTAGATCAAAGAGAAAAAAACAGAAGACTGAGACTGAGATTATGACTTCTTCCGGTAGACGTGTGAAAAGGAGGAACTTGGATGAGTGTGATGACAATACCATTGGGAGTAGCCGACGTAGGAAGGGAAAAAGTGGCCAAAAAATATCAAGAAGGAAATTTTCAAAATCTAAATCTTCCCGGCCTCAAAGGGCTGCTGCACGCAATGCTCTTCATCTATTTTCTAAAATTACTGGTACACCGACAGACGGAGATGGAGATGAAGATAGTTTGATTGGTGATTTTTCAGACAGTGAATCAACATTGCAAGAGTCTAATATTGACAGTGATGAATCTGATGGAACTTTACAGAATGATCAATTGAATTATTCCAAGGGAAAAGAAGTATCCTATTATGAATCAGAGGACACAAAATCTCAGGAGTTAACTGAAACTCGTGTGAATTCAATGAACAAGAGGAGGTTGGTTCTGAAGTTGCCAATTCGTGATATATCCAAGTCCACAAACGAGTTTGATTACCAGGCTGAGTTGGCTGGCTCATCATCAAAAACTATACCAGAGGTTACTGATTTTAATGAAAACAGACCAAGTTTTAAGGATTCAAGTTATTATTCTGGCAGTACAAGTAACCCTACAGTGGAAAGAACAGATCAAGCAAAACTTGGCCAGGTGAAAGACCATGTAGATTTGCTGGGTAAAATTAAATGGGGAATGGTTAGGGCACGATCATCTAAACCGTTGAGAGTGGGAGAAGCTATGCCATCAGAGGAAAATCCTTACTCTGGAAAATGTCCTAATCATGATGAGAAACAGAATGTTAGTAGTGGGCATGAGAAAGAGGAGAAGAACTTTAGTGCACCAACCCCTGAGTTTGAAACCCAAAATGATGACAGTCTGGTTGATAGTTTGGCAGAGATTAATGAAAACTGTGCTGATACTACCACCTCACAGCCTTTTAATCCCACCGTTAATGGAGGAGAGATCGCAGGTTCCAGCAATTGCAGGGGCAAAGATGAATCACTAATTCCTGCATATGTGATTCCTCAGGATACTGTTCCTGCTTCAATCAGCTATAGTGGGGTTGACCAACTACCTGAACCAAATATTAGTTTCTGTTCTGTTTCAACAAAACTAAGGTCGAAAAGGGGTGCAAGGGATCCTGAAAGTCCATCCAAGCATGAAACAAAATCGTCTGTGATAAAGAATACTGTGTGTAGCTCTATTGATAATACTATTTTGAACAATGAACAGCACGTGCTTGTGGATGACAACACTAGAGATAAATCCAATCTGGGAGAGAATGTATCTCATGAAATAGATCCTCAGATTAGAGAGAATAGTACTTCACAGGATTTGCTAGAACCACAAGCACAAAGAGATAAAATGTATAAAGCCGTTTATAGAAGGTCAAGATCACATAGGGCTGTGACTAATTTAGCTGACAGTGGTGGCCAGGGTGAATCTACTTCAAATGGGAGCAACAGTAATTTCAACACCGCAGCAGACTTCTGTAATGGCACAGATGAGACTGTTCATATCAATGGCTCCTTAGAGTTGGAACCAAATACTTGTGACCCAAACTATGAGCAGAATAATTGCAAAGTGCTGCAAGGACATCATGGAGATTCTATTATTAAAAGTCCACAAAATGTTTCCACAAGTGGAGGACAACTCACAGAAGAAGAAAGGGGTTCTAGCTCAAAATTGACTGTTGGTTTGAGGTCTACTAGGAGTCGGAGATCTAGTTATAATATTCGTGAGAATAGTCCTGTAAATAAAAGGAAATCACTACAATCGAATGTGAAAGTATCATGGTTGTTGTTATCAACCCATGAAGAAGGATGCAGATATATTCCACAACAGGGAGATGAAGTTGTATATTTGAGACAGGGACACCAAGAGTATATAGATTATTGTCGTAAAAATGAGTCAGGGCCTTGGAATTCACTCAAGGGACATATAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTGGAGTATTCCCATCTTGCAGGATCTGGTGATAGCTGCTGCAAAATGACCCTTCAGTTCGTAGATCCTAATTCAAGTGTTGATGGGAAATCTTTTAAGTTAACCCTACCTGAAGTTACTAATTTCCCAGATTTTCTAGTTGAAAGAACTAGGTTTGATGCCGCTATGCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAGAAGTGAGGATAATTCCTCTGGTAATTGGTGGGATGGTCGAATTTTGTGCGTAAAAGCCAAGTCTTCCGAATTTTCAGATAGTCCATGGGAGAGCTGTACTGTTCGGTACAAAAATGACCTCACTGAAACGCATTTGCATAGTCCTTGGGAGCTTTTTGATGCTGAAACTGTATGGGAACAGCCTCACATTGATGATAGCATGAGAAATAAACTGCAATCTGCTCTCACCAAATTACTGCAGTCAGGCAACACAGTCCAGGATCGTTACGGAGTGCATGAATTGAAGAAGATTTCAAGCAAGTCCAAATTTATAAACAGGTATCCTGTTCCTATATCACTTGAATTGGTGCAGTCAAGGCTGAATAACAATTACTACCGTAGTTTGGAGGCTCTGCAGCACGATGTGACAAATTTACTGGCTAATTCCACTTCCTTTTTTGAAAAGGATGCCGAGATGTCAGCAAAAATCAAACGCCTATCAGAATGGTTCACACGAACATTATCATCTCTATAG 5295 0.4108 MISILFVPLALYRNMALQKYAPSGHAPPINMKHLTFSSKMPKKAEHDTACQNHNMDVDIDLREVYFLIMHFLSAGPCHKTSLQFWNELLEHELLPRRYHAWYSKTGACSGDKDDDGLSFPLNYNMLMERYPHIEKDHLVKLLKQLLLSTTIPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDKMKEVKRPPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRSACYAIAKPSTMVQKMKNIKRLRGHRNAVYCAIFDRSGRYVITGSDDRLVKVWSMETAYCLASCRGHDGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARYTQSSPRLYIPRPSDSVIGKSSGPSSSTVPQSHQIFCCAYNANGTVFVTGSSDNLARVWNACKLSTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFCTTETWKEENIPKFKNSWLNHDNIVTCSRDGSAIIWIPRSRRSHGKSGRWTRAYHLRVPPPPMPPQPHRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMGMWLSASSLKAFSPKSSLQLDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGMPIQIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNVQDLLCDSAMIPYPEPYQSEFQQRRLGALGLEWRPSSLRLAVGPDFNLDPDYHMLPLADLDLVTEPLPEFIDVMEWEPEVEVFSDDADSEYNVTEDCSSKGEKGCSSSNASGDSGCSTDNSEGEDNHMESIRRSKRKKQKTETEIMTSSGRRVKRRNLDECDDNTIGSSRRRKGKSGQKISRRKFSKSKSSRPQRAAARNALHLFSKITGTPTDGDGDEDSLIGDFSDSESTLQESNIDSDESDGTLQNDQLNYSKGKEVSYYESEDTKSQELTETRVNSMNKRRLVLKLPIRDISKSTNEFDYQAELAGSSSKTIPEVTDFNENRPSFKDSSYYSGSTSNPTVERTDQAKLGQVKDHVDLLGKIKWGMVRARSSKPLRVGEAMPSEENPYSGKCPNHDEKQNVSSGHEKEEKNFSAPTPEFETQNDDSLVDSLAEINENCADTTTSQPFNPTVNGGEIAGSSNCRGKDESLIPAYVIPQDTVPASISYSGVDQLPEPNISFCSVSTKLRSKRGARDPESPSKHETKSSVIKNTVCSSIDNTILNNEQHVLVDDNTRDKSNLGENVSHEIDPQIRENSTSQDLLEPQAQRDKMYKAVYRRSRSHRAVTNLADSGGQGESTSNGSNSNFNTAADFCNGTDETVHINGSLELEPNTCDPNYEQNNCKVLQGHHGDSIIKSPQNVSTSGGQLTEEERGSSSKLTVGLRSTRSRRSSYNIRENSPVNKRKSLQSNVKVSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIDYCRKNESGPWNSLKGHIRAVEYCRVQSLEYSHLAGSGDSCCKMTLQFVDPNSSVDGKSFKLTLPEVTNFPDFLVERTRFDAAMQRNWTRRDKCRVWWRSEDNSSGNWWDGRILCVKAKSSEFSDSPWESCTVRYKNDLTETHLHSPWELFDAETVWEQPHIDDSMRNKLQSALTKLLQSGNTVQDRYGVHELKKISSKSKFINRYPVPISLELVQSRLNNNYYRSLEALQHDVTNLLANSTSFFEKDAEMSAKIKRLSEWFTRTLSSL 1764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00108 1764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 325 - -
Vimu10g00108 1764 FunFam Bromodomain and WD repeat domain-containing protein 396 534 - -
Vimu10g00108 1764 Gene3D - 221 398 IPR015943 GO:0005515
Vimu10g00108 1764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 285 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1051 1072 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1335 1354 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1329 1354 - -
Vimu10g00108 1764 FunFam WD40/YVTN repeat-like-containing domain 1658 1764 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1284 1309 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1399 1440 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 954 986 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1129 1145 - -
Vimu10g00108 1764 SMART WD40_4 443 508 IPR001680 GO:0005515
Vimu10g00108 1764 SMART WD40_4 393 431 IPR001680 GO:0005515
Vimu10g00108 1764 SMART WD40_4 327 369 IPR001680 GO:0005515
Vimu10g00108 1764 SMART WD40_4 602 642 IPR001680 GO:0005515
Vimu10g00108 1764 SMART WD40_4 243 282 IPR001680 GO:0005515
Vimu10g00108 1764 SMART WD40_4 285 324 IPR001680 GO:0005515
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1238 1254 - -
Vimu10g00108 1764 Pfam Bromodomain 1702 1749 IPR001487 GO:0005515
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1107 1154 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1284 1299 - -
Vimu10g00108 1764 Pfam WD domain, G-beta repeat 330 369 IPR001680 GO:0005515
Vimu10g00108 1764 Pfam WD domain, G-beta repeat 288 323 IPR001680 GO:0005515
Vimu10g00108 1764 Pfam WD domain, G-beta repeat 402 431 IPR001680 GO:0005515
Vimu10g00108 1764 Pfam WD domain, G-beta repeat 245 282 IPR001680 GO:0005515
Vimu10g00108 1764 Pfam WD domain, G-beta repeat 603 642 IPR001680 GO:0005515
Vimu10g00108 1764 PANTHER WD REPEAT DOMAIN 9 51 1763 - -
Vimu10g00108 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 643 IPR001680 GO:0005515
Vimu10g00108 1764 CDD WD40 246 642 - -
Vimu10g00108 1764 Gene3D - 1657 1764 IPR036427 GO:0005515
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 827 847 - -
Vimu10g00108 1764 SUPERFAMILY WD40 repeat-like 241 685 IPR036322 GO:0005515
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 1237 1257 - -
Vimu10g00108 1764 Gene3D - 399 470 IPR015943 GO:0005515
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 848 898 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 900 918 - -
Vimu10g00108 1764 FunFam Bromodomain and WD repeat-containing protein 544 698 - -
Vimu10g00108 1764 FunFam PH-interacting protein isoform X1 225 394 - -
Vimu10g00108 1764 CDD Bromo_WDR9_I_like 1636 1764 - -
Vimu10g00108 1764 MobiDBLite consensus disorder prediction 812 996 - -
Vimu10g00108 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 378 IPR001680 GO:0005515
Vimu10g00108 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Vimu10g00108 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 431 IPR001680 GO:0005515
Vimu10g00108 1764 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515
Vimu10g00108 1764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 369 - -
Vimu10g00108 1764 Gene3D - 473 700 IPR015943 GO:0005515
Vimu10g00108 1764 SUPERFAMILY Bromodomain 1700 1762 IPR036427 GO:0005515
Vimu10g00108 1764 ProSitePatterns Trp-Asp (WD) repeats signature. 629 643 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00108 Vimu-Chr10 601844 618556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00108 242 431 Miscellaneous Gene Families AT5G08390 21.990 1.55e-09 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00108 K11797 - gmx:100818665 2994.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00108 10 601844 618556 Vimu10g00108 10 601844 618556 ECH