Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00042 ATGGTATCTGTTGGTTCAAAAGCATTGGTGTCAAGGAGCTCAATGGGCGACTACGATCATGAATCCCTCAAGCAAGCCAAAAGTAAGAGGAGAAAGCATAAGAAAGGGGGAGCCGCTCATGAATCTGATTCCAATCCCAAACACTCAAACACAAACTCCAACACCTTCACTTCCCCGCCTCAACTATCCCGTGTTAGGAAGCAGCTTGACCCCGAAACTACCCAATACTTCTCAGAAATTGCTAATCTTTTTGAAACCGAGGGGGTAGAATTGGAGGAACGTTCACTTATATGTGCTAATGCGCTCCAAGAAACCAAGGGGAAAGAATTCGAAATAGCAACCGATTATATTGTTAGCCACACTTTGGAGACCATTCTCCAGGGTTGTGATGTTGACCACCTTTGCGATTTCCTTCACTCTTCTGCTAACGACTTCCCCTATATTGCAATGGATAGATCCGGTTCTCATGTTGCTGAGACCGCCATCAAGTCTTTAGCCGTTCATCTCGAAGACGATGAGGCTCGCCCTCTGGTTGAGGAGGCTTTAACCATCATATGCAAGGTGATTGCAGCAAATTCTGTTGATGTAATGTGTAACTGCTATGGTTCTCATGTGCTTCGGACTCTTCTCTGCCTTTGTAGAGGAGTACCATTAGATAAGTCTGGATACTATTTATCAAAATCGACTACCCTATTAGCAGAGCGGTTGAATTCAAAGGAGTTTTCAAAGAAAGATGATGCAACAAATTTTCAGCCTGGATTTCCAAATTTACTGAAAGTACTTGTCTCAGATACGTTAAAGCATGCTAAGAAATGTATTAAGACACTACAAGTTGACCAATTCAGTAGTTTGGTTTTCCAGATTATGGGCCATCTATTGTTATTCAATGAGGTTCTCTATAAAGTCAATTTTAATTTTCTTGCTTTGGTTGATGCCGAGGGCATATGCGATGATGAAGAGTTGTTACATGTGATTCCTTTCCTTCTTGGCTGCAAGGATAAGAATAATGCGGAGGGCAATTTTATAGACACTAAAGTAGTAGCAGATCTCAAGAATTTATTAAAAGAATCTAAATTTAGCCATCTAATGGAGGTCGTTTTGGAAGTATCTCCCGAGGCCTTGTTCAATGAATTATTCACTAAAGTATTCAGGAATTACTTGTTTGAGTTATCTTCTCACCAACATGGGAACTTTGTTGTCCAAGCATTAATTTCTTATGCAAGCAATCAAGATCTGATGGAGTTGATTTGGGAAGAACTTGGGCCAAATTTGGAGGATCTTTTCAAAATGGGAAGGTCAGGAGTTGTTGCTTCACTTGTTGCTGCCAGTGAAAGGCTTCATGTTAACGAACACAAGTGCTGTGAAGTCCTTGCTGAAGCGGTATGCCCAGTGGATGATTCTCCGAAAGGGATTGTTCCACGACTCATGTTTCTTGACAGTTGTTTCACATATGACGATAAGTCCAACTGGAGCTGGCAAAGTGGTGCTAGAATGAATGTCATGGGTTCTCTGATCTTACAGACAGTATTCCGGTTTAGAAGCGAATATATACAACCTTATATCAAAAGTATAACTTCCATGGAGGCAACTCATGTTCTTGAAGCAGTGGGAGATTCAAGAGGATCACATGTTATTGAGGCTTTTCTAAGTTCAGGAGCTTCTGGGAAACTGAAGCGCAGATTGATTACCAAACTGCAAGGACATTTTGGGGAGGTCGCACTCAACTCATCTGGTGCTTTTACCATTGATAAGTGCTTCACGGCCAGTAATTTGTCCCTAAGAGAGACTATAGTGTCTGAGGTGTTAGCTGTGCGAAGTGATCTTTCCAAGACAAAGCAGGGCTCGTATCTATTAAGGAAACTAGATATTGACGGATTTGCTGCGAATCCTGATCATTGGAGGTCAAAACAAGCATCCAAAGAATCTACTTACAAAGATTTTTACTCTATGTTTGGTTCGAATGATACAAAGTTGATGAAAAACGATTCCTTTCTTAGAGACACCTCGAATAACAAATCTAATCCAAACACTGTAAATGAAATGAGGAAAGAAATTGACCAATCTCTAGGTTCTGGTGCACCTTTTTTGAGCTTCCAAAATAAAAACCCAAAAAAGGAAAAACACAAAAGTAAGAGAAATGCTTATATTAGTGGAGATGATGATGAGTCTAATAGAAAAAAGAGGTCTAAAAAGGAAAAGGTTGAAAGTAGGTTTGATACTGCTGCTACTGCAGCAAGCGGGAAGACAGTGAAGAAACGACAAAGAGATGGTGATCTTTCCGAGGCTTCTCTAAAGAAAGTGAAGGCATAG 2310 0.4061 MVSVGSKALVSRSSMGDYDHESLKQAKSKRRKHKKGGAAHESDSNPKHSNTNSNTFTSPPQLSRVRKQLDPETTQYFSEIANLFETEGVELEERSLICANALQETKGKEFEIATDYIVSHTLETILQGCDVDHLCDFLHSSANDFPYIAMDRSGSHVAETAIKSLAVHLEDDEARPLVEEALTIICKVIAANSVDVMCNCYGSHVLRTLLCLCRGVPLDKSGYYLSKSTTLLAERLNSKEFSKKDDATNFQPGFPNLLKVLVSDTLKHAKKCIKTLQVDQFSSLVFQIMGHLLLFNEVLYKVNFNFLALVDAEGICDDEELLHVIPFLLGCKDKNNAEGNFIDTKVVADLKNLLKESKFSHLMEVVLEVSPEALFNELFTKVFRNYLFELSSHQHGNFVVQALISYASNQDLMELIWEELGPNLEDLFKMGRSGVVASLVAASERLHVNEHKCCEVLAEAVCPVDDSPKGIVPRLMFLDSCFTYDDKSNWSWQSGARMNVMGSLILQTVFRFRSEYIQPYIKSITSMEATHVLEAVGDSRGSHVIEAFLSSGASGKLKRRLITKLQGHFGEVALNSSGAFTIDKCFTASNLSLRETIVSEVLAVRSDLSKTKQGSYLLRKLDIDGFAANPDHWRSKQASKESTYKDFYSMFGSNDTKLMKNDSFLRDTSNNKSNPNTVNEMRKEIDQSLGSGAPFLSFQNKNPKKEKHKSKRNAYISGDDDESNRKKRSKKEKVESRFDTAATAASGKTVKKRQRDGDLSEASLKKVKA 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00042 769 MobiDBLite consensus disorder prediction 749 769 - -
Vimu10g00042 769 Pfam Pumilio-family RNA binding repeat 388 416 IPR001313 GO:0003723
Vimu10g00042 769 MobiDBLite consensus disorder prediction 1 63 - -
Vimu10g00042 769 SUPERFAMILY ARM repeat 89 622 IPR016024 -
Vimu10g00042 769 SMART pum_5 564 599 IPR001313 GO:0003723
Vimu10g00042 769 SMART pum_5 188 225 IPR001313 GO:0003723
Vimu10g00042 769 SMART pum_5 527 563 IPR001313 GO:0003723
Vimu10g00042 769 SMART pum_5 104 139 IPR001313 GO:0003723
Vimu10g00042 769 SMART pum_5 382 417 IPR001313 GO:0003723
Vimu10g00042 769 MobiDBLite consensus disorder prediction 43 63 - -
Vimu10g00042 769 Gene3D - 482 663 IPR011989 -
Vimu10g00042 769 Gene3D - 62 433 IPR011989 -
Vimu10g00042 769 MobiDBLite consensus disorder prediction 690 769 - -
Vimu10g00042 769 ProSiteProfiles Pumilio RNA-binding repeat profile. 381 418 IPR001313 GO:0003723
Vimu10g00042 769 PANTHER NUCLEOLAR PROTEIN 9 25 680 IPR040000 GO:0003723
Vimu10g00042 769 MobiDBLite consensus disorder prediction 712 738 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00042 K14790 - gmx:100797960 1207.59