Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00022 ATGGAACCTTTTGGTCGCGGTGGTCGTGGTCGTGGTCGTGGTGGCGACCGTCGCTCTCAATCTACTTCACCGGTTGTTGTGGGCAACGAGCAATGTGGGCGAGGTAAGGGTAGCAAAGAGAAGAAGCAAGAGCAATGTGGGCGAGGTAGAGGCAGGGAAGAGAAGAAGCAACCGCAGAATTCATCACCTGATTCTGGTTCCGATTCTGACTCTGTTGGAATGGGAATGGCAAAGTTAAATATTGGCGATGACGTTGATAAGCCATCAGCAGCAGCCGCAGCAGTAGGAGAGGGAGGGTTCGATATATGTCCCCGTAAACAACCTGGAGGCGTGGTTCTGAAACCTCCATTGCTTGCACAGAACAGAGAAAGGAGAAGATCCCGTAGTAGTAATAACAATGGCATTGGGTTGTCGTTGAGGCCTGGGATGGTGCTTCTGAAGGGTTACCTTTCACTGAGTGATCAGCAGAAGATAGTGGAAAGGTGCAAGGAGTTGGGGATGGGCGTGGGAGGATTCTACCAGCCTGGTTACGGGGAAGGTACCAAGATGCATTTGAAGATGATGTGCCTCGGAAAGAACTGGGATCCTCACACATCTCAGTACGGAGAACGACGACCATTCGACGGAGCAAAACCCCCCCAAATCCCTCCCGAGTTTCAGACATTGGTCACCAATGCACTTCGTGATTCCAACGCCCTCGTTCCTCAAAATCGCCTTCCCTCCATCTCACCCGACATCTGCATTGTCAATTTTTACTCCCAAACTGGCCGTTTGGGTCTTCATCAAGACAAGGATGAAAGTGAAGACTCTCTTCGCCGAGGCTTGCCCGTGGTATCCTTCTCCATCGGAGACTCTGCACAGTTCCTCTATGGAGATCACAGGGATCCCGACAAGGCAGAGAAACTGCAACTCGAATCTGGGGATGTTTTGATCTTTGGTGGCTCCTCCAGAAATGTATTCCATGGAGTTAGCGTTATTCATCCAAACTCTGCCCCCAACCTCTTGCTGCAACACACTAATCTACGCCCTGGTCGCTTGAATCTCACTTTCAGACAGTACTAA 1062 0.5075 MEPFGRGGRGRGRGGDRRSQSTSPVVVGNEQCGRGKGSKEKKQEQCGRGRGREEKKQPQNSSPDSGSDSDSVGMGMAKLNIGDDVDKPSAAAAAVGEGGFDICPRKQPGGVVLKPPLLAQNRERRRSRSSNNNGIGLSLRPGMVLLKGYLSLSDQQKIVERCKELGMGVGGFYQPGYGEGTKMHLKMMCLGKNWDPHTSQYGERRPFDGAKPPQIPPEFQTLVTNALRDSNALVPQNRLPSISPDICIVNFYSQTGRLGLHQDKDESEDSLRRGLPVVSFSIGDSAQFLYGDHRDPDKAEKLQLESGDVLIFGGSSRNVFHGVSVIHPNSAPNLLLQHTNLRPGRLNLTFRQY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00022 353 FunFam 2-oxoglutarate-dependent dioxygenase family protein 137 353 - -
Vimu10g00022 353 MobiDBLite consensus disorder prediction 113 135 - -
Vimu10g00022 353 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 243 353 IPR005123 -
Vimu10g00022 353 SUPERFAMILY Clavaminate synthase-like 139 353 - -
Vimu10g00022 353 MobiDBLite consensus disorder prediction 1 16 - -
Vimu10g00022 353 Pfam 2OG-Fe(II) oxygenase superfamily 142 351 IPR027450 -
Vimu10g00022 353 Gene3D - 137 353 IPR037151 -
Vimu10g00022 353 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED 24 353 IPR004574 -
Vimu10g00022 353 MobiDBLite consensus disorder prediction 34 59 - -
Vimu10g00022 353 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00022 Vimu-Chr10 174707 175865 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00022 - - vum:124841521 595.119