Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00009 ATGGCTCATGAGTCACTCTCAGAAACTCCAGATATCTCGCCGCCCTCATCTACATCACAGTTGCAGTCAGATCCATCTCTTTCAAGAAACGGATCTTTTAGCCGGCTTAACGCTCAGGCACCAGAATTTGTGCCAACTCGAGCCCCCCCACGGACCGATTTGCAGCAACCCAGGCTTGTTGTACCACCTCCTCCTCCAGCTTCTAGTATGGTACACGTTTATTCACCGCCCCATTTACCGATTCAAGGTCATGTCGTCCCGGTACAGAATCACCATCATAATCTTGGCCATCAGCATCACGTTCCAGTTCACTACCGGCCTCATCATCACCCACATCAGTATTATGTTAGTTCTGATTCTACCGTGCAGCAGTCTCAAGTTGACCAGGATCGTCTTCCTTCTTCCAAAAGCAAGCTGTCTGATGAAGCCAGTCAGAAAATTTTGAATCAGGTAAACTCTAGTTACCTTTTGGATATGCCAATTAGTGAATGGATGGTGGAGTATTATTTCAGTGATTTAAACTTAGCTACTACCGATCATTTGATGAGGTTCATCAACAAAGATCCAGAAGGTTTTGTGCCTATATCTGTTGTCGCATCTTTCAAAAAGATTAAGGCCCTCATAACCAGTCACTCCCTACTTGCCACTGTTTTGAGGAACTCATCAAAGCTCGTGGTTAGTGAAGATGGAAAGAAAATCAGACGCCAGTATCCCCTGACCGAGTCTGATATAGAAGAGCTACAATCTCGCATTGTTGTAGCTGAAAACCTACCTGAGGATCATTGTCATCAGAATCTTATGAAGGTTTTCTCAGTAGTTGGGAGTGTGAAGACTATCCGTACCTGTCCACCCCAAACCTCCAATAGTGGGGCTTCTTCTGCTTTGAGATTGGGAAAAGTTGATGGTTTGCCCTTATCTAACAAGTTGCATGCATTTGTTGAATATGAATCTATTGAGCTGGCTGAGAGAGCAGTTGCTGAGCTGAATGATGAGGGAAACTGGAGGAGTGGCCTTCGGGTTCGCCTAATGCTTAGACGCATGGAAAAAAGTCCCATTTCATATAATGTTATCCGAGACAACTATATCTATCTGTCTAAACCATCCCAAGGACGAGGAAAGAAGGGACTTGATGTTGAAGTTGGCTGTGATGAGGATTATACTTCTGTGCCTGAGCCACATGCAAGTGAGAAACAATTAGAAGATGCTTCCTTCCCCGAAACTCAGTTGCATGAACATGCTGGAGAAGAGCATGGTTATGAAAAAGAGACTGGGCAAAGGAAAGGTCGAAGCCGGGGCCGGGGTAAGGGACGAGGCCGAGTGCATTGTCATCAGAATAATCGTGTGGGAACACCCCCTTCAAATAATACAATTTTCACGGATCAAGTAATTGCCAAGCAACCACCAGGGCCCCGAATGCCGGATGGTACAAGAGGATTTTCAATGGGTAGGGGGAAGGCGGTAGCTGTCAATATAGCCTAA 1479 0.4564 MAHESLSETPDISPPSSTSQLQSDPSLSRNGSFSRLNAQAPEFVPTRAPPRTDLQQPRLVVPPPPPASSMVHVYSPPHLPIQGHVVPVQNHHHNLGHQHHVPVHYRPHHHPHQYYVSSDSTVQQSQVDQDRLPSSKSKLSDEASQKILNQVNSSYLLDMPISEWMVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSLLATVLRNSSKLVVSEDGKKIRRQYPLTESDIEELQSRIVVAENLPEDHCHQNLMKVFSVVGSVKTIRTCPPQTSNSGASSALRLGKVDGLPLSNKLHAFVEYESIELAERAVAELNDEGNWRSGLRVRLMLRRMEKSPISYNVIRDNYIYLSKPSQGRGKKGLDVEVGCDEDYTSVPEPHASEKQLEDASFPETQLHEHAGEEHGYEKETGQRKGRSRGRGKGRGRVHCHQNNRVGTPPSNNTIFTDQVIAKQPPGPRMPDGTRGFSMGRGKAVAVNIA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00009 492 Gene3D - 163 240 IPR036388 -
Vimu10g00009 492 Gene3D - 241 350 IPR012677 -
Vimu10g00009 492 Pfam La domain 166 220 IPR006630 -
Vimu10g00009 492 MobiDBLite consensus disorder prediction 411 429 - -
Vimu10g00009 492 PRINTS Lupus La protein signature 165 182 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu10g00009 492 PRINTS Lupus La protein signature 191 206 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu10g00009 492 PRINTS Lupus La protein signature 307 325 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu10g00009 492 PRINTS Lupus La protein signature 222 235 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vimu10g00009 492 MobiDBLite consensus disorder prediction 411 456 - -
Vimu10g00009 492 CDD RRM_La_like_plant 250 344 IPR034878 GO:0003723
Vimu10g00009 492 MobiDBLite consensus disorder prediction 106 142 - -
Vimu10g00009 492 SMART la 141 236 IPR006630 -
Vimu10g00009 492 ProSiteProfiles La-type HTH domain profile. 152 243 IPR006630 -
Vimu10g00009 492 MobiDBLite consensus disorder prediction 9 39 - -
Vimu10g00009 492 MobiDBLite consensus disorder prediction 1 68 - -
Vimu10g00009 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 347 IPR000504 GO:0003723
Vimu10g00009 492 PANTHER LUPUS LA PROTEIN-RELATED 34 480 IPR045180 -
Vimu10g00009 492 MobiDBLite consensus disorder prediction 114 142 - -
Vimu10g00009 492 SUPERFAMILY RNA-binding domain, RBD 232 350 IPR035979 GO:0003676
Vimu10g00009 492 SUPERFAMILY "Winged helix" DNA-binding domain 166 246 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00009 Vimu-Chr10 83807 93320 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00009 K15191 - gmx:100801679 733.791