Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04180 ATGACAGGAGACGCGAGGCTAATCGAAGAAGGCTCCGGTGAGATTGAGACGGCTGCAGAGTCTGGTTACCCGGCGGCACAATCAGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGTAAACAGAAAGCATTTGTTTATCATCATTTTGCTTCAGATGGTGGCAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCTGTCAATGGTTTTCTCATTTCCAAAGATTCTCCCGTCATTGAACCTATTAGGCTACACAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCACAGAAAGGGAATGCTGCTGCTATGTACAAAGTGGGACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGATGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTAAATATTTTATAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGCTACTGCCTTATACAAATTAGTTGCGGAACGAGGTCCATGGAGCTCTTTGTCCAGATGGGCACTGGAAGCATACTTAAAAGGTGATGTTGGCAAGGCATATATGTTGTATTCAAGAATGGCCGAGATGGGCTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGATAAATATGGAGAACGAAGCATGTGCATGGGTGAATCTGGACTTTGCACTGATGCAGAAAGGCATCAGCGGGCACATTCTTTGTGGTGGCAAGCTTCTGAGCAGGGTAACGAACATGCTGCTTTACTAATTGGAGACGCATATTACTATGGCAGGGGAACTGTCAGGGATTATGACCGAGCTGCTGAGGCTTACATGCATGCCAAATCGCAATCTAATGCACAGGCCATGTTTAATCTTGGGTACATGCATGAGCATGGCCAAGGACTTCCCCTTGACCTTCATCTAGCCAAGCGTTACTATGATGAAGCTTTAGTGCATGATCCTGCAGCTAAGTTGCCAGTTACACTGGCACTTACAAGCCTGTGGGTTCGGATGAACCATGCTGACAGTATATTGGTCGTAGGTGGAGATATGATATTCTGTCTCAATTGCTTAATGATCTATTTAAATGGCTAA 1557 0.4438 MTGDARLIEEGSGEIETAAESGYPAAQSVLGFLWGMGLLRERSKQKAFVYHHFASDGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLATALYKLVAERGPWSSLSRWALEAYLKGDVGKAYMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGLCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTVRDYDRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDEALVHDPAAKLPVTLALTSLWVRMNHADSILVVGGDMIFCLNCLMIYLNG 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04180 518 Gene3D Tetratricopeptide repeat domain 107 216 IPR011990 GO:0005515
Vifa6g04180 518 Pfam Sel1 repeat 337 355 IPR006597 -
Vifa6g04180 518 Pfam Sel1 repeat 24 59 IPR006597 -
Vifa6g04180 518 Pfam Sel1 repeat 292 322 IPR006597 -
Vifa6g04180 518 Pfam Sel1 repeat 216 250 IPR006597 -
Vifa6g04180 518 Pfam Sel1 repeat 255 286 IPR006597 -
Vifa6g04180 518 Pfam Sel1 repeat 180 212 IPR006597 -
Vifa6g04180 518 Pfam Sel1 repeat 142 177 IPR006597 -
Vifa6g04180 518 Pfam Sel1 repeat 440 470 IPR006597 -
Vifa6g04180 518 Pfam Sel1 repeat 406 428 IPR006597 -
Vifa6g04180 518 SUPERFAMILY HCP-like 123 232 - -
Vifa6g04180 518 SUPERFAMILY HCP-like 16 88 - -
Vifa6g04180 518 Gene3D Tetratricopeptide repeat domain 217 330 IPR011990 GO:0005515
Vifa6g04180 518 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 3 501 IPR044623 GO:0030433
Vifa6g04180 518 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 107 218 - -
Vifa6g04180 518 SUPERFAMILY HCP-like 234 363 - -
Vifa6g04180 518 Gene3D Tetratricopeptide repeat domain 331 487 IPR011990 GO:0005515
Vifa6g04180 518 Gene3D Tetratricopeptide repeat domain 10 100 IPR011990 GO:0005515
Vifa6g04180 518 SUPERFAMILY HCP-like 335 476 - -
Vifa6g04180 518 SMART sel1 404 439 IPR006597 -
Vifa6g04180 518 SMART sel1 24 59 IPR006597 -
Vifa6g04180 518 SMART sel1 215 251 IPR006597 -
Vifa6g04180 518 SMART sel1 252 287 IPR006597 -
Vifa6g04180 518 SMART sel1 142 178 IPR006597 -
Vifa6g04180 518 SMART sel1 179 214 IPR006597 -
Vifa6g04180 518 SMART sel1 440 475 IPR006597 -
Vifa6g04180 518 SMART sel1 288 323 IPR006597 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04180 Vifa-Chr6 1373922021 1373926901 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04180 K14026 - gmx:100787823 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04180 6 1373922021 1373926901 Vifa6g04180 6 1373922021 1373926901 ECH